| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,802,201 – 19,802,308 |
| Length | 107 |
| Max. P | 0.745012 |
| Location | 19,802,201 – 19,802,308 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.99 |
| Mean single sequence MFE | -27.13 |
| Consensus MFE | -21.12 |
| Energy contribution | -21.49 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745012 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19802201 107 + 27905053 AACUUAAA----------CUUUUC---CAUUCCACAGAGAUGAUCAAGGUGUUCGAUGGCAACAACUCAUUCCGACGCCAGCAGUACCGCGUGAUCAUCGUGCAGCGCACCUAUACGCUG ........----------......---...........((((((((.((((((.((((....))......)).)))))).((......)).))))))))...(((((........))))) ( -28.40) >DroVir_CAF1 35889 113 + 1 UGCCUAAUCGAUUCA-A-UUAUU-----GUCUUGCAGAGAUGAUCAAGGUAUUUGACGGCAACAACUCAUUCCGGCGCCAACAGUACCGUGCGAUCAUCGUGCAGCGUACCUAUACGCUG (((.....((((...-.-..)))-----)....)))..(((((((..((((((.(..(((..(..........)..)))..)))))))....)))))))...(((((((....))))))) ( -30.60) >DroGri_CAF1 37436 106 + 1 CAACUAA-------------GAUCGA-UUUCCCACAGAGAUGAUCAAGGUCUUCGAUGGCAACAACUCAUUCCGACGCCAGCAGUACCGUGCCAUCAUCGUGCAGCGUACAUACACGCUG ..(((..-------------((((.(-((((.....)))))))))..)))....(((((((...((((............).)))....)))))))......((((((......)))))) ( -25.60) >DroWil_CAF1 36348 113 + 1 AACUUUGA---UUCUCAUUCCUU----UCCAUCACAGAAAUGAUCAAGGUAUUCGAUGGCAACAAUUCUUUCCGACGCCAACAGUAUCGCGUGAUCAUUGUGCAACGGACUUACACUCUG ........---............----(((..((((...(((((((.((((((.(.((((................)))).)))))))...)))))))))))....)))........... ( -21.79) >DroMoj_CAF1 39070 117 + 1 AGACUAACCAGUUCC-U-UCGUUCCA-UUCCUUGCAGAGAUGAUCAAGGUGUUUGAUGGCAACAACUCAUUCCGACGCCAGCAAUACCGUGCGAUCGUCGUUCAGCGCACAUACACGCUG .((((....))))..-.-........-...........(((((((..(((((((((((....))..)))....)))))).(((......))))))))))...(((((........))))) ( -28.60) >DroAna_CAF1 34576 109 + 1 AUCUUGAA----------AUCUUCGGAUA-UCCACAGAGAUGAUCAAGGUCUUUGAUGGCAAUAACUCAUUCCGACGCCAGCAGUACCGGGUGAUCAUCGUACAACGCACAUACACGCUG .(((.((.----------(((....))).-))...)))((((((((.(((..(((.((((................)))).))).)))...)))))))).......((........)).. ( -27.79) >consensus AACCUAAA__________UUCUUC___UAUCCCACAGAGAUGAUCAAGGUAUUCGAUGGCAACAACUCAUUCCGACGCCAGCAGUACCGUGCGAUCAUCGUGCAGCGCACAUACACGCUG ......................................(((((((..((((((.(.((((................)))).)))))))....)))))))...(((((........))))) (-21.12 = -21.49 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:58 2006