Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,801,675 – 19,801,782 |
Length | 107 |
Max. P | 0.994648 |
Location | 19,801,675 – 19,801,782 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 50.97 |
Mean single sequence MFE | -23.45 |
Consensus MFE | -13.24 |
Energy contribution | -14.05 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.38 |
Mean z-score | -2.92 |
Structure conservation index | 0.56 |
SVM decision value | 2.50 |
SVM RNA-class probability | 0.994648 |
Prediction | RNA |
WARNING | Mean pairwise identity too low. |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19801675 107 + 27905053 UACUCGGAAGGAUAUGUAUUAAAU----AUAUGUAAGA---CAGAAAAUAGCAUUUAAAACGAAAUAAGCAUUUUUAA---AAAGA---ACUCAUUUAAUGCACAUUUUUCCGAAUGUAA (((((((((((((.((((((((((----...((.....---))((((((.((((((......))))..))))))))..---.....---....)))))))))).))))))))))..))). ( -22.50) >DroEre_CAF1 32637 89 + 1 UCCUCGGAAGAAUAUGUAUUACAUCUAAAUG--UA-----------------------AAUGAAUUAACCUAUUUUGA---GGAGA---AACGAUUUAAUGCACAUUUUUCUGAACGUAA ...((((((((((.(((((((.(((..(((.--..-----------------------.....)))..(((......)---))...---...))).))))))).))))))))))...... ( -19.90) >DroYak_CAF1 32744 94 + 1 UCCUCGGAAGAUUAUGUAUUAAAUAUAUAUAGUUG-----------------------AGAUAAUGAACCUUUUUUAAAAAAGAGA---UAUAGUUUAAUGCACAUUUUUCCGAGCGUAA ..(((((((((...((((((((((.(((((.(((.-----------------------(.....).)))((((((....)))))))---))))))))))))))...)))))))))..... ( -25.00) >DroAna_CAF1 34052 106 + 1 CACUCGAAAAAGU-UCCAGUAAUUACUUAGGCUUAAGGAUUCAGAGCUUGGC-UUAGAAGCUUC------UUGUAUUG---GAAGGCUAACUUACUCGAUA---ACUUUUUCGAAUGCAU ((.((((((((((-((.(((((....((((((((.........)))))))).-((((...((((------(......)---)))).)))).))))).))..---)))))))))).))... ( -26.40) >consensus UACUCGGAAGAAUAUGUAUUAAAUAUAUAUA_UUA_______________________AACGAAUUAACCUUUUUUAA___AAAGA___AAUAAUUUAAUGCACAUUUUUCCGAACGUAA ...((((((((((.(((((((((((...................................................................))))))))))).))))))))))...... (-13.24 = -14.05 + 0.81)
Location | 19,801,675 – 19,801,782 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 50.97 |
Mean single sequence MFE | -19.05 |
Consensus MFE | -8.64 |
Energy contribution | -10.57 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.24 |
Mean z-score | -1.94 |
Structure conservation index | 0.45 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980422 |
Prediction | RNA |
WARNING | Mean pairwise identity too low. |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19801675 107 - 27905053 UUACAUUCGGAAAAAUGUGCAUUAAAUGAGU---UCUUU---UUAAAAAUGCUUAUUUCGUUUUAAAUGCUAUUUUCUG---UCUUACAUAU----AUUUAAUACAUAUCCUUCCGAGUA ....((((((((..(((((.(((((((((((---....(---((((((............))))))).)))......((---.....))..)----))))))).)))))..)))))))). ( -19.30) >DroEre_CAF1 32637 89 - 1 UUACGUUCAGAAAAAUGUGCAUUAAAUCGUU---UCUCC---UCAAAAUAGGUUAAUUCAUU-----------------------UA--CAUUUAGAUGUAAUACAUAUUCUUCCGAGGA .....(((.(((.((((((.((((.......---...((---(......)))......((((-----------------------((--....)))))))))).)))))).))).))).. ( -11.70) >DroYak_CAF1 32744 94 - 1 UUACGCUCGGAAAAAUGUGCAUUAAACUAUA---UCUCUUUUUUAAAAAAGGUUCAUUAUCU-----------------------CAACUAUAUAUAUUUAAUACAUAAUCUUCCGAGGA .....(((((((.(.((((.((((((.((((---(..(((((....)))))(((........-----------------------.)))...))))))))))).)))).).))))))).. ( -16.30) >DroAna_CAF1 34052 106 - 1 AUGCAUUCGAAAAAGU---UAUCGAGUAAGUUAGCCUUC---CAAUACAA------GAAGCUUCUAA-GCCAAGCUCUGAAUCCUUAAGCCUAAGUAAUUACUGGA-ACUUUUUCGAGUG ...(((((((((((((---..((.(((((.((((.(((.---.......(------((.((((....-...)))))))........))).))))....))))).))-))))))))))))) ( -28.89) >consensus UUACAUUCGGAAAAAUGUGCAUUAAAUAAGU___UCUCC___UUAAAAAAGGUUAAUUAGCU_______________________UAA_CAUAUAUAUUUAAUACAUAUUCUUCCGAGGA .....(((((((.((((((.((((((((...................................................................)))))))).)))))).))))))).. ( -8.64 = -10.57 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:57 2006