Locus 7432

Sequence ID 3R_DroMel_CAF1
Location 19,797,176 – 19,797,279
Length 103
Max. P 0.561709
window12014

overview

Window 4

Location 19,797,176 – 19,797,279
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 80.84
Mean single sequence MFE -24.98
Consensus MFE -12.42
Energy contribution -14.70
Covariance contribution 2.28
Combinations/Pair 1.12
Mean z-score -2.31
Structure conservation index 0.50
SVM decision value 0.06
SVM RNA-class probability 0.561709
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19797176 103 - 27905053
UUUGUGUGCAGCAAUCUUAACAUAGAUAUCAUAGUUCUAUUUUUAGCCUGCCGUAAAAGUUGUAUUUACACAUAGACAAAAGUUGGGGAGGCGUACACAAACA
(((((((((....((((......))))..................((((.(((((((.......))))).....(((....))).)).))))))))))))).. ( -26.50)
>DroPse_CAF1 30688 82 - 1
UUUUUGUG---CUAGCUUAACAUAGAUAUCAUAGUUCUAUUUUUAGCAUUGCGUAAAAGUUGUGCGGAGA-AUAGACAUA---------------CAUAU--G
..((((((---.........))))))...(((((((((((((((.((((.((......)).)))).))))-)))))...)---------------).)))--) ( -16.70)
>DroSec_CAF1 27621 103 - 1
UUUGUGUGCAGCAAUCUUAACAUAGAUAUCAUAGUUCUUUUUUUAGCCCGCCGUAAAAGUUGUAUUUACACAAAGACAAAAGUCGGGGCGGCGUACAGAAACA
(((.(((((....((((......))))..................(((.((((((((.......))))).....(((....)))..))))))))))).))).. ( -24.00)
>DroSim_CAF1 27656 103 - 1
UUUGUGUGCAGCAAUCUUAACAUAGAUAUCAUAGUUCUAUUUUUAGCCCGCCGUAAAAGUUGUAUUUACACAUAGACAAAAGUCGGGGCGGCGUACACAAACA
(((((((((....((((......))))..................(((.((((((((.......))))).....(((....)))..))))))))))))))).. ( -27.90)
>DroEre_CAF1 28072 103 - 1
UUUGUGUGCAGCAAUCUUAACAUAGAUAUCAUAGUUCUAUAUUUAGCCCGCCGUAAAAGUUGUAUUUACACAUAGACAAAAGUCGGGGCGGUGUACACAAACA
((((((((((.(.........(((((.........))))).....((((...(((((.......))))).....(((....))).))))).)))))))))).. ( -29.60)
>DroYak_CAF1 27822 88 - 1
UUUGUGUGCAGCAAUCUUAACAU---------------AUUUUUAGCCCGCCGUAAAAGUUGUAUUUACACAUAGACAAAAGUCGGGGCGGUGUACACAAACA
((((((((((((...........---------------.......))((((((((((.......))))).....(((....)))..))))))))))))))).. ( -25.17)
>consensus
UUUGUGUGCAGCAAUCUUAACAUAGAUAUCAUAGUUCUAUUUUUAGCCCGCCGUAAAAGUUGUAUUUACACAUAGACAAAAGUCGGGGCGGCGUACACAAACA
(((((((((............(((((.........))))).....((((.(((......((((............))))....))).).)))))))))))).. (-12.42 = -14.70 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:50 2006