Locus 7431

Sequence ID 3R_DroMel_CAF1
Location 19,796,184 – 19,796,276
Length 92
Max. P 0.912372
window12013

overview

Window 3

Location 19,796,184 – 19,796,276
Length 92
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.55
Mean single sequence MFE -17.33
Consensus MFE -12.07
Energy contribution -13.02
Covariance contribution 0.94
Combinations/Pair 1.18
Mean z-score -2.75
Structure conservation index 0.70
SVM decision value 1.08
SVM RNA-class probability 0.912372
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19796184 92 + 27905053
UGGGCAAAUAUCAAUUUUAAUUGUGCUUCCUCUUCACGCACUACGCAUGUCAACUUGUGCGU--AUUCAAUUGUCCCUAACCUCCAA---CUCC----CCC-
.((((((...............((((...........))))((((((((......)))))))--).....))))))...........---....----...- ( -19.20)
>DroPse_CAF1 29172 93 + 1
UGU----AUAUCCAUUUUAAUUGUUCUUCUUCUUCACGGACUACGCAUGUCAACUUGUGCGUAUAUUCAAUUGUCCCUAACCUCCAAAAACUCC----CGC-
...----..............................((((((((((((......)))))))).........))))..................----...- ( -11.90)
>DroWil_CAF1 29744 91 + 1
GGGGCAAAUAUCAAUUUUAAUUGU-----UUCUUAUUGUACUACGCAUGUCAACUUGUGCGU--AUACAAUUGCCCUCAAUAUACCA---UUCCCUCCCUC-
(((((((....((((....)))).-----......(((((.((((((((......)))))))--)))))))))))))..........---...........- ( -22.60)
>DroYak_CAF1 26792 94 + 1
UGGGCAAAUAUCAAUUUUAAUUGUGCUUCCUCUUCACGCACUACGCAUGUCAACUUGUGCGU--AUUCAAUUGUCCCUAACCUCCAA---CUCCCC--CUC-
.((((((...............((((...........))))((((((((......)))))))--).....))))))...........---......--...- ( -19.20)
>DroAna_CAF1 28797 92 + 1
-GGGCAAAUAUCAAUUUUAAUUGUGCUUCCUCUUCACGCACUACGCAUGUCAACUUGUGCGU--AUUCAAUUGUCCCUAACCUCCCA---CUUG----CUAU
-((((((...............((((...........))))((((((((......)))))))--).....))))))...........---....----.... ( -19.20)
>DroPer_CAF1 29549 97 + 1
UGUACAUAUAUCCAUUUUAAUUGUUCUUCUUCUUCCCGGACUACGCAUGUCAACUUGUGCGUAUAUUCAAUUGUCCCUAACCUCCAAAAACUCC----CGC-
.....................................((((((((((((......)))))))).........))))..................----...- ( -11.90)
>consensus
UGGGCAAAUAUCAAUUUUAAUUGUGCUUCCUCUUCACGCACUACGCAUGUCAACUUGUGCGU__AUUCAAUUGUCCCUAACCUCCAA___CUCC____CUC_
.((((((...............((((...........)))).(((((((......)))))))........)))))).......................... (-12.07 = -13.02 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:49 2006