Locus 7430

Sequence ID 3R_DroMel_CAF1
Location 19,794,996 – 19,795,097
Length 101
Max. P 0.572419
window12012

overview

Window 2

Location 19,794,996 – 19,795,097
Length 101
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 79.62
Mean single sequence MFE -33.15
Consensus MFE -21.00
Energy contribution -21.17
Covariance contribution 0.17
Combinations/Pair 1.23
Mean z-score -1.43
Structure conservation index 0.63
SVM decision value 0.08
SVM RNA-class probability 0.572419
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19794996 101 - 27905053
UUUUCG----GUUCCGCUG---GC--AUCGUCGUCAUUUUCCAUGGCGGCCAUUGAUGACGCACUUUUAGCCCUUCGCUGCUAUCGGCAGGGGCACCUCACUCGGAUUCA------
.....(----..(((((..---.(--(((((((((((.....))))))))....))))..)).......((((((.((((....)))))))))).........)))..).------ ( -34.00)
>DroGri_CAF1 27908 98 - 1
UUUUCGGUUGGUUCCGCUA---ACCAAACGCUGCCACAU-UCAUGGCGGCCAUUGAUGACGCACUUUUAGCCCUUCGUUGCUAUCGGCUAGGUCAGCA--------GCG-G-----
.....((((((.....)))---)))....(((((((...-...)))))))..........((.......))....((((((((((.....))).))))--------)))-.----- ( -31.20)
>DroEre_CAF1 25755 101 - 1
UUUUCG----GUUCCGCUG---GC--AUCGUCGUCAUUUUCCAUGGCGGCCAUUGAUGACGCACUUUUAGCCCUUCGCUGCUAUCGGCAGGGGCACCUCACUCGGAUUCA------
.....(----..(((((..---.(--(((((((((((.....))))))))....))))..)).......((((((.((((....)))))))))).........)))..).------ ( -34.00)
>DroWil_CAF1 26794 99 - 1
-UUUCU----GUUCCGCGGUUGCU--ACCGCCG-CUUUUUCCAUGGCGGCCAUUGAUGACGCACUUUUAGCCCUUCGUUGCUAUCGGCAGGGGCAACA--------GUU-GAGGCU
-...((----(((..(((((....--)))((((-((........))))))..........)).......((((((.((((....))))))))))))))--------)..-...... ( -31.90)
>DroYak_CAF1 25550 101 - 1
UUUUCG----GUUCCGCUG---GC--AUCGUCGUCAUUUUCCAUGGCGGCCAUUGAUGACGCACUUUUAGCCCUUCGCUGCUAUCGGCAGGGGCACCUCACUCGGAUUCA------
.....(----..(((((..---.(--(((((((((((.....))))))))....))))..)).......((((((.((((....)))))))))).........)))..).------ ( -34.00)
>DroAna_CAF1 27772 101 - 1
UUUUCG----GUUCCGCUG---GC--GGCAUCGUCAUGUUCCAUGGCGGCCAUUGAUGACGCACUUUUAGCCCUUCGCUGCUAUCGGCAGGGGCACCACACUCGGAUUCU------
.....(----..((((.((---(.--(((..(((((((...))))))))))..................((((((.((((....)))))))))).)))....))))..).------ ( -33.80)
>consensus
UUUUCG____GUUCCGCUG___GC__AUCGUCGUCAUUUUCCAUGGCGGCCAUUGAUGACGCACUUUUAGCCCUUCGCUGCUAUCGGCAGGGGCACCACACUCGGAUUCA______
...............((............((((((((.....))))))))((....))..)).......((((((.((((....))))))))))...................... (-21.00 = -21.17 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:48 2006