Locus 7428

Sequence ID 3R_DroMel_CAF1
Location 19,774,932 – 19,775,025
Length 93
Max. P 0.989204
window12007

overview

Window 7

Location 19,774,932 – 19,775,025
Length 93
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 96.69
Mean single sequence MFE -22.76
Consensus MFE -21.78
Energy contribution -21.78
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.96
SVM decision value 2.15
SVM RNA-class probability 0.989204
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19774932 93 - 27905053
AAA-AAAUCUCUUCUACAGCCAAAAAUUGCAUGAAUGCAUUUUAGCGCGGAAAUGCGCUGGUAUGAGUUGUCUGAAUUCGUGCAUAUACCACUA
...-.......................(((((((((.(((.((((((((....)))))))).)))..........))))))))).......... ( -22.00)
>DroSec_CAF1 5405 94 - 1
AAAAAAAUCUCUUCUACAGCCAAAAAUUGCAUGAAUGCAUUUUAGCGCGGAAAUGCGCUGGUAUGAGUUGUCUGAAUUCGUGCAUAUACCACUA
...........................(((((((((.(((.((((((((....)))))))).)))..........))))))))).......... ( -22.00)
>DroSim_CAF1 5427 94 - 1
AAAAAAAUCUCUUCUACAGCCAAAAAUUGCAUGAAUGCAUUUUAGCGCGGAAAUGCGCUGGUAUGAGUUGUCUGAAUUCGUGCAUAUACCACUA
...........................(((((((((.(((.((((((((....)))))))).)))..........))))))))).......... ( -22.00)
>DroEre_CAF1 5591 93 - 1
AAA-AAAUCUCUUCUACAGCCGAAAAUUGCAUGAAUGCAUUUUAGCGCGGAAAUGCGCUGGUAUGCGUUGUCUGAAUUCGUGCAUAUUCCACUA
...-.............((..(((...(((((((((((((.((((((((....)))))))).))))(....)...)))))))))..)))..)). ( -25.80)
>DroYak_CAF1 5560 93 - 1
AAA-AAAUCUCUUCUACAGCCGAAAAUUGCAUGAAUGCAUUUUAGCGCGGAAAUGCGCUGGUAUGAGUUGUCUGAAUUCGUGCAUACGCCACCA
...-.......................(((((((((.(((.((((((((....)))))))).)))..........))))))))).......... ( -22.00)
>consensus
AAA_AAAUCUCUUCUACAGCCAAAAAUUGCAUGAAUGCAUUUUAGCGCGGAAAUGCGCUGGUAUGAGUUGUCUGAAUUCGUGCAUAUACCACUA
...........................(((((((((.(((.((((((((....)))))))).)))..........))))))))).......... (-21.78 = -21.78 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:43 2006