| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,769,838 – 19,769,937 |
| Length | 99 |
| Max. P | 0.926621 |
| Location | 19,769,838 – 19,769,937 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 79.64 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -18.07 |
| Energy contribution | -18.57 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.926621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19769838 99 + 27905053 AUAAUCCAUGUGUUAAUAG-GAGAACUU--AAAAUUUAACCGUUUACUUACAAUGGCUUUUGGCCAAAGACGAGCAGCCAAAAGUCGAUGAAGUAUGCGGGC ....(((.(((....))))-))......--.........((((.(((((.((.(((((((((((............))))))))))).))))))).)))).. ( -29.90) >DroSec_CAF1 429 99 + 1 AUAAUCCAUGUAUUAAUAU-GAGUACUC--CAAUUUUAAGCGUUAACUUACAAUGGCUUUUGGCCAAAGACGAGCAGCCAAAAGUCGAUGAAGUAGGCGGGC .....((..(((((.....-.)))))..--..........(((..((((.((.(((((((((((............))))))))))).))))))..))))). ( -25.70) >DroSim_CAF1 429 99 + 1 AUAAUCCAUGUAUUAAUAU-GAGAACUC--AAAGUUGAAGCGUUUACUUACAAUGGCUUUUGGCCAAAGACGAGCAGCCAAAAGUCGAUGAAGUAGGCGGGC ....(((..((.(((((.(-((....))--)..))))).))((((((((.((.(((((((((((............))))))))))).))))))))))))). ( -30.20) >DroEre_CAF1 441 100 + 1 AUAAUUCAUGAGAUUUUAAAGUUAACAUG-CCAUUAAAAGCU-UUACUUACAAUGGCUUUUGGCCAAAGACGAGCAGCCAAAAGUCGAUGAAGUAGGCGGGC ............................(-((.......(((-(.((((.((.(((((((((((............))))))))))).)))))))))).))) ( -24.70) >DroYak_CAF1 429 100 + 1 AUCAUCCAUGAGUUAGUACAGUAAACAC--CCGGGAAAAGCUAAUACUUACAAUGGCUUUUGGCCAAAGACGAGCAGCCAGAAGUCGAUGAAGUAGGCGGGC ...........................(--(((((.....))..(((((.((.(((((((((((............))))))))))).)))))))..)))). ( -24.70) >DroAna_CAF1 429 99 + 1 ACAAUU-AU-AAUUGAUAU-GGUUUCUUUCACGAAUUAAGAAACUACUUACAAUGGCUUCUGGCCAAAGAUCAGCAGCCAAAAGUCAAUAAAGUAGGCGGGA ......-..-.((((((.(-((((((((.........))))))))).......(((((.(((..(...)..))).)))))...))))))............. ( -22.00) >consensus AUAAUCCAUGAAUUAAUAU_GAGAACUC__AAAAUUUAAGCGUUUACUUACAAUGGCUUUUGGCCAAAGACGAGCAGCCAAAAGUCGAUGAAGUAGGCGGGC ...........................................((((((.((.(((((((((((............))))))))))).))))))))...... (-18.07 = -18.57 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:42 2006