Locus 7425

Sequence ID 3R_DroMel_CAF1
Location 19,768,638 – 19,768,740
Length 102
Max. P 0.642753
window12003

overview

Window 3

Location 19,768,638 – 19,768,740
Length 102
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 77.61
Mean single sequence MFE -42.50
Consensus MFE -25.71
Energy contribution -25.80
Covariance contribution 0.09
Combinations/Pair 1.23
Mean z-score -1.51
Structure conservation index 0.60
SVM decision value 0.23
SVM RNA-class probability 0.642753
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19768638 102 + 27905053
GACUGCAUCACAGCGGUGGGCAGUGCCUUGGCCAGCGUGGCCAGCUCCUGCUGGCGGCGGGCGCCCUGGCGGGCCAGACUCUUCAGGUGAUACAUG-CUGCU-----------A
.(((((......))))).(((((((((((((((..(((.((((((....)))))).)))..(((....))))))))((....)))))).......)-)))))-----------. ( -47.51)
>DroVir_CAF1 9665 108 + 1
GUCUGGAGCACAGCAGUGGGCAAUGCCUUGGCCAAGGCGGUCAACUCCUGCUGGCGCAUAGCGCCCUGUCGAGCCAAACUCUUCAGGUGAUACAUGAUU-----UCUAUACUA-
((.(((((..((((((.(((...((((((....)))))).....)))))))))((((...))))((((..(((.....)))..))))...........)-----)))).))..- ( -35.80)
>DroPse_CAF1 9040 100 + 1
GCCUGCAGCGCUGCCGUGGGCAGGGCCUUGACCAGGGUGGUCAACUCCUGCUGGCGCAUAGCGCCCUGGCGGGCCAAACUCUUCAGGUGAUACAUGGC---A-----------A
(((((..((((((.(((.(((((((..((((((.....)))))).))))))).)))..))))))(((((.(((.....))).))))).....)).)))---.-----------. ( -46.20)
>DroGri_CAF1 10863 113 + 1
GUCUGGAGCACUGCUGUCGGCAAUGCCUUGGCCAAUGCCGUCAGCUCCUGCUGACGCAUGGCACCCUGGCGGGCCAAACUCUUCAGGUGAUACAUGCCUGCUUCUAUAUACUA-
....((((((........((((..((....))...))))((((((....))))))(((((.((((.(((.(((.....))).)))))))...))))).)))))).........- ( -42.60)
>DroWil_CAF1 9491 101 + 1
CUGUGGAGCACAGCCGUUGGCAGUGCCUUAGCCAAGGUGGUCAGCUCCUGCUGACGCAUGGCUCCCUGACGGGCCAAACUCUUCAGGUGAUACAUA-UUUC------------A
.((((((((.(((((.(((((.........)))))))).((((((....))))))...))))))(((((.(((.....))).))))).....))))-....------------. ( -36.70)
>DroPer_CAF1 9041 100 + 1
GCCUGCAGCGCUGCCGUGGGCAGGGCCUUGACCAGGGUGGUCAACUCCUGCUGGCGCAUAGCGCCCUGGCGGGCCAAACUCUUCAGGUGAUACAUGGC---A-----------A
(((((..((((((.(((.(((((((..((((((.....)))))).))))))).)))..))))))(((((.(((.....))).))))).....)).)))---.-----------. ( -46.20)
>consensus
GUCUGCAGCACAGCCGUGGGCAGUGCCUUGGCCAAGGUGGUCAACUCCUGCUGGCGCAUAGCGCCCUGGCGGGCCAAACUCUUCAGGUGAUACAUG_CU______________A
.......((...((.((.(((((.(..((((((.....))))))..)))))).))))...))..(((((.(((.....))).)))))........................... (-25.71 = -25.80 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:40 2006