| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,760,362 – 19,760,479 |
| Length | 117 |
| Max. P | 0.500000 |
| Location | 19,760,362 – 19,760,479 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.68 |
| Mean single sequence MFE | -39.37 |
| Consensus MFE | -27.10 |
| Energy contribution | -25.97 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19760362 117 + 27905053 ACGCGUGCCAACCAGGAUGAUGCCGUAUACAAGGAGGGUAUCCUGAAGCUCAGUUUGAACUGCGCCAAUGAGGCGGCUAACCA---GCGGGUCAAACGAUACGUGGAACUCAGCUCUGGU .((((((.(...(((((((...((........))....))))))).......((((((.(((((((.....)))((....)).---)))).))))))).))))))............... ( -38.60) >DroVir_CAF1 346 117 + 1 ACGCGUUCCAAUCAAGAUGAUGCCGUCUACAAGGAGGGCAUCUACAAGCUGAGCAUCAACUGUGCCAAUGAGGCUGCCAGUCA---GCCGACCAAGCGCUAUGUGGAGCUCAGCUCGGGC ......(((.........((((((.(((....))).))))))....((((((((..((...((((......(((((.....))---)))......))))....))..)))))))).))). ( -46.30) >DroGri_CAF1 367 120 + 1 ACGCGUGCCAAUCAAGACGAUGCCGUCUACAAGGAGGGCAUCCACAAGCUGAGCAUUAACUGUGCUAAUGAGGCCGCCAAUCAGGAGCAGACCAAACGCUAUGUGGAACUCAGCUCGGGC ......(((.........((((((.(((....))).))))))..(.(((((((.........((((..(((.........)))..))))..(((.........)))..))))))).)))) ( -36.50) >DroWil_CAF1 348 117 + 1 ACGCGUGCCAAUCAGGAUGAUGCCGUUUACAAGGAGGGCAUCUACAAGUUAAGCAUCAAUUGUGCCACUGAGGCAGCCAAUCA---ACAGGUCAAACGCUACAUUGAGCUCAGUUCGGGU ..(((((((..((((...((((((.(((....))).))))))..........((((.....))))..))))))).(((.....---...)))...))))....((((((...)))))).. ( -31.70) >DroMoj_CAF1 373 117 + 1 ACGCGUGCGAACCAAGAUGAUGCUGUCUAUAAGGAGGGCAUCUACAAGCUGAGCAUGAACUGUGCCAAUGAGGCAGCCAGCCA---GCAGGUGAAACGCUUUGUAGAGCUCAGCUCGGGC ..((((....(((.....((((((.(((....))).)))))).....((((.((.((.....((((.....))))..))))))---)).)))...))))......((((...)))).... ( -39.70) >DroAna_CAF1 478 117 + 1 ACUCGUGCCAACCAGGAUGAUGCCGUCUACAAGGAGGGAAUUCUGAAGCUGAGUCUCAACUGUGCUAAUGAAGCAGCUGCCCA---GCGGGUGAAGCGCUACGUUGAGCUCAGUUCCGGC ......(((...((((((....((.(((....))).)).)))))).(((((((.((((((..((((.....))))(((((((.---..))))..))).....)))))))))))))..))) ( -43.40) >consensus ACGCGUGCCAACCAAGAUGAUGCCGUCUACAAGGAGGGCAUCCACAAGCUGAGCAUCAACUGUGCCAAUGAGGCAGCCAACCA___GCAGGUCAAACGCUACGUGGAGCUCAGCUCGGGC ......(((.........((((((.(((....))).))))))..(.((((((((........((((.....))))....(((.......)))...............)))))))).)))) (-27.10 = -25.97 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:37 2006