Locus 7421

Sequence ID 3R_DroMel_CAF1
Location 19,749,779 – 19,749,899
Length 120
Max. P 0.670094
window11998

overview

Window 8

Location 19,749,779 – 19,749,899
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.25
Mean single sequence MFE -41.80
Consensus MFE -34.68
Energy contribution -35.60
Covariance contribution 0.92
Combinations/Pair 1.09
Mean z-score -1.41
Structure conservation index 0.83
SVM decision value 0.29
SVM RNA-class probability 0.670094
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19749779 120 - 27905053
UCUCAGGUAGCACUGGAAAUAAAAGUUGGCGAACAUGAUAAACAUGAUGGUCGCGGAGCAGCUGACCAGAAAGAGGGUUCCCUGCGAUGCAGUGCACUGCCGCUGCAUGGCGGUUAAGGC
.....(((.((((((.(........((.((((.(((.((....)).))).)))).))((((..((((........))))..))))..).)))))))))((((((....))))))...... ( -40.40)
>DroSec_CAF1 17040 120 - 1
CCUCAGGUAGCAUUGGAAAUAAAAGUUGGCGAACAUGAUGAACAUGAUCGUCGCGGAGCAGCUGACCAGAAAGAGGGUUCCCUGCGAUGCAGUGCACUGCCGCUGCAUGGCGGUUAAGGC
(((..(((.(((((.............(((((.((((.....)))).)))))(((..((((..((((........))))..))))..)))))))))))((((((....))))))..))). ( -42.00)
>DroSim_CAF1 19848 120 - 1
CCUGAGGUAGCAUUGGAAAUAAAAGUUGGCGAACAUGAUGAACAUGAUCGUCGCGGAGCAGCUGACCAGAAAGAGGGUUCCCUGCGAUGCAGUGCACUGCCGCUGCAUGGCGGUUAAGGC
(((..(((.(((((.............(((((.((((.....)))).)))))(((..((((..((((........))))..))))..)))))))))))((((((....))))))..))). ( -42.60)
>DroEre_CAF1 30137 120 - 1
UCUCACAUAGCAAUGGAAAUAAAAGUUGGCGAACAUGAUGAACAUGAUCGCCGCGGAGCAGCUGACCACAAAGAGGGUUCCCUGCGAGGCCGUGCACUGCCGCUGCAUGGCGGUGAAGGC
.(((.....((.((....)).......(((((.((((.....)))).)))))))...((((..((((........))))..)))))))(((...((((((((.....))))))))..))) ( -45.30)
>DroYak_CAF1 30580 120 - 1
UCUCAUGUAGCACUGGAAAUAAAAGUUGGCGAACAGGAUGAACAUGAUCGCCGCGGAGCAGCUGACCAGAAAGAGGGUUCCCUGCGAGGCCUUGCACUCCCGUUGCAUGGCGGUGAAGGC
.(((.....(((((.........))).(((((.(((......).)).)))))))...((((..((((........))))..)))))))(((((.((((.((((...)))).))))))))) ( -38.70)
>consensus
UCUCAGGUAGCACUGGAAAUAAAAGUUGGCGAACAUGAUGAACAUGAUCGUCGCGGAGCAGCUGACCAGAAAGAGGGUUCCCUGCGAUGCAGUGCACUGCCGCUGCAUGGCGGUUAAGGC
.........((((((.........((.(((((.((((.....)))).)))))))...((((..((((........))))..))))....)))))).((((((((....))))))..)).. (-34.68 = -35.60 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:35 2006