Locus 742

Sequence ID 3R_DroMel_CAF1
Location 2,633,238 – 2,633,358
Length 120
Max. P 0.803080
window1174

overview

Window 4

Location 2,633,238 – 2,633,358
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.56
Mean single sequence MFE -25.33
Consensus MFE -21.96
Energy contribution -21.63
Covariance contribution -0.33
Combinations/Pair 1.11
Mean z-score -2.18
Structure conservation index 0.87
SVM decision value 0.62
SVM RNA-class probability 0.803080
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2633238 120 + 27905053
AUCAAGGUCCCAUUUUGAGACUUAGUCACCUACUGGUAGUCAUAAUGGUACAUUAUUCAGAAAUAUGUACAUUUAUACGUACAUAUCUGGUUAAGCUAAAUGGCUUACACUUACUUAAAU
...(((((.(((((.((((((...)))(((....)))..))).))))).)).....(((((..(((((((........)))))))))))).((((((....))))))..)))........ ( -28.20)
>DroSec_CAF1 33298 120 + 1
AUCCAGGUCCAAUUUUGAGACAUAGACACUGACUGGUAGUCAUAAUUGUACAUUAUUCAAAAAUAUGUACAUAUAUGCGUACAUAUUUGGUAAAAGUAAAUUGCUUAAAUUUACUUAAAU
..((..((.(((((.(((.((.(((.......)))))..))).))))).)).........((((((((((........))))))))))))...(((((((((.....))))))))).... ( -24.50)
>DroSim_CAF1 21531 120 + 1
AUCCAGGUCCAAUUUUGAGACAUAGACACUGACUGGUAGUCAUAAUUGUACAUUAUUCAAAAAUAUGUACAUAUAUGCGUACAUAUUUGGUAAAAGUAAAUGGCUUAAAUUUACUUAAAU
..((..((.(((((.(((.((.(((.......)))))..))).))))).)).........((((((((((........))))))))))))...((((((((.......)))))))).... ( -23.30)
>consensus
AUCCAGGUCCAAUUUUGAGACAUAGACACUGACUGGUAGUCAUAAUUGUACAUUAUUCAAAAAUAUGUACAUAUAUGCGUACAUAUUUGGUAAAAGUAAAUGGCUUAAAUUUACUUAAAU
......((.(((((.(((.((.(((.......)))))..))).))))).)).....(((((..(((((((........))))))))))))...(((((((((.....))))))))).... (-21.96 = -21.63 +  -0.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:48 2006