Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,743,792 – 19,743,886 |
Length | 94 |
Max. P | 0.596825 |
Location | 19,743,792 – 19,743,886 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 80.48 |
Mean single sequence MFE | -27.33 |
Consensus MFE | -18.59 |
Energy contribution | -18.07 |
Covariance contribution | -0.53 |
Combinations/Pair | 1.30 |
Mean z-score | -1.36 |
Structure conservation index | 0.68 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19743792 94 - 27905053 AAGCAUUUAAAUCUUGCUGCCUUUGCCUCUACCGUCGUUGUUUGCACAAGUGCUAAAUGGUUUUUUGGCGCAACGUGACAUCAGCAGAGGGCGG------ .((((.........))))((((((((.......)).((((..(((((..((((((((......))))))))...))).)).)))).))))))..------ ( -25.20) >DroSec_CAF1 11001 94 - 1 AAGCAUUUAAAUCUUGCUGCCUUUGCCUCUACCGUCGUUGUUUGCACAAGUGCUAAAUGGUUUUUUGGCGCAACGUGACAUCAGCGGAGGGCGG------ .((((.........)))).....((((.((.((((.(.(((...(((..((((((((......))))))))...)))))).).)))))))))).------ ( -28.20) >DroSim_CAF1 13128 94 - 1 AAGCAUGUAAAUCUUGCUGCCUUUGCCUCUACCGUCGUUGUUUGCACAAGUGCUAAAUGGUUUUUUGGCGCAACGUGACAUCAGCGGAGGGCGG------ ..(((.(((.....))))))...((((.((.((((.(.(((...(((..((((((((......))))))))...)))))).).)))))))))).------ ( -28.40) >DroEre_CAF1 24080 80 - 1 AAGCCUUUAAAUC----UGCUG----CU---C--UUGUUGUUUGCACAAGUGCUAAAUGGCU-UUUGGCGCAACGUGACAUCGGCGGAGUGCAA------ .............----(((.(----((---(--(.((((..(((((..((((((((.....-))))))))...))).)).)))))))))))).------ ( -24.00) >DroYak_CAF1 24198 86 - 1 AAGCAUUUAAAUCUUGCUGCUG----CU---CUGUUGUUGUUUGCACAAGUGCUAAAUGGCU-UUUGGCGCAACGUGACAUCAGCGGAGGGCGG------ .((((.........))))(((.----((---((((((.(((...(((..((((((((.....-))))))))...)))))).)))))))))))..------ ( -30.20) >DroAna_CAF1 24493 85 - 1 AAGCAUUUGAAUCUC-----UU----CC---CGCUUGCUGUUUGCUCAAGUGCUAA-U-GCU-UUCGGCGCAACGUGACAUCAGCAGAGGGCGGGAAAAU ...............-----((----((---((((..(((((((.(((.((((..(-.-...-.)..))))....)))))..)))))..))))))))... ( -28.00) >consensus AAGCAUUUAAAUCUUGCUGCCU____CU___CCGUCGUUGUUUGCACAAGUGCUAAAUGGCU_UUUGGCGCAACGUGACAUCAGCGGAGGGCGG______ ..................................(((((.(((((....((((((((......))))))))....((....))))))).)))))...... (-18.59 = -18.07 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:29 2006