Locus 7417

Sequence ID 3R_DroMel_CAF1
Location 19,738,264 – 19,738,359
Length 95
Max. P 0.919964
window11991

overview

Window 1

Location 19,738,264 – 19,738,359
Length 95
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 76.82
Mean single sequence MFE -24.47
Consensus MFE -14.87
Energy contribution -14.87
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.61
SVM decision value 1.13
SVM RNA-class probability 0.919964
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19738264 95 + 27905053
AACGUCACGCAAAAAACCGAAGGGAAACCAUAAACUCAAAUUAAUGACCCCAGCAGGGGGAGC-CGGGUGCCC--------UGCAAAUGGGUGGGGGGUUUUAA
............((((((...((....))..................(((((((((((.(...-....).)))--------))).......))))))))))).. ( -29.11)
>DroSec_CAF1 5488 81 + 1
AACGUCACGCAAAAAACCGAAGGGAAACCAUAAACUCAAAUUAAUGACCCCAGCAGGGGGAGC-UGGGUGCCC--------UGCAAAUGG--------------
........(((....(((...((....))..................((((....))))....-..)))....--------)))......-------------- ( -20.10)
>DroSim_CAF1 7736 90 + 1
AACGUCACGCAAAAAACCGAAGGGAAACCAUAAACUCAAAUUAAUGACCCCAACAGGGGCAGGCACCGUGAUUUGCUCGAGAGCAAAUGG--------------
...((((((.......((...((....))...............((.((((....))))))))...))))))(((((....)))))....-------------- ( -24.20)
>consensus
AACGUCACGCAAAAAACCGAAGGGAAACCAUAAACUCAAAUUAAUGACCCCAGCAGGGGGAGC_AGGGUGCCC________UGCAAAUGG______________
........((...........((....))..................((((....)))).......................)).................... (-14.87 = -14.87 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:28 2006