Locus 7415

Sequence ID 3R_DroMel_CAF1
Location 19,729,353 – 19,729,453
Length 100
Max. P 0.578650
window11987

overview

Window 7

Location 19,729,353 – 19,729,453
Length 100
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 71.99
Mean single sequence MFE -27.62
Consensus MFE -15.06
Energy contribution -13.25
Covariance contribution -1.81
Combinations/Pair 1.67
Mean z-score -1.67
Structure conservation index 0.55
SVM decision value 0.09
SVM RNA-class probability 0.578650
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19729353 100 - 27905053
GUAUGUAUGCAUUGCAUUUGCUAUAAUGUGUGUUUAGAGUGGACCUU---UACACGCGCCGUUUGGCAUUCCAAGCGCGCUGAUUAAAUUUUCG-------AUUUCAUAU---
...((((.(((.......)))))))..((((((..((.(....))).---.))))))(((((((((....))))))).))..............-------.........--- ( -23.30)
>DroEre_CAF1 9222 100 - 1
AUAUGUAUACAUUGCAUUUGCACUAAUGUGUGUUUAGGGUGGACCUU---UACACGCGCCGCUUGGCAUUCCAAGCGCGCUGAUUAAAUUUUCG-------AUUUCAUAU---
(((((.......(((....))).((((((((((..(((.....))).---.))))))(((((((((....))))))).))..))))........-------....)))))--- ( -29.50)
>DroYak_CAF1 8865 107 - 1
AUAUGUAUACACUGCAUUUGCGCUAAUGUGCGUUUAGAGUGGACCUU---UACACGCGCCGUUUGGCAUUCCGAGUGCGCUGAUUAAACUUUCGUAUGUGUAUUUCAUAU---
(((((.((((((.(((((((.(((((.((((((.(((((.....)))---)).))))))...)))))....)))))))...((........))....))))))..)))))--- ( -32.40)
>DroAna_CAF1 10859 92 - 1
-------------GGGUGUAUGCUAAUGUGUGUGCCGAGCCGGCCCGGCCGAUAUGUG-UGUUUGGCAUUCCAAGCUUGUUGAUUAAAUUUUCG-------AUUUCAUGUUCG
-------------.((..(((((....)))))..))((((((((...))))....(((-.((((((....))))))..(((((........)))-------))..))))))). ( -25.30)
>consensus
AUAUGUAUACAUUGCAUUUGCGCUAAUGUGUGUUUAGAGUGGACCUU___UACACGCGCCGUUUGGCAUUCCAAGCGCGCUGAUUAAAUUUUCG_______AUUUCAUAU___
..............(((((((((......))))...)))))...........((.((((.((((((....))))))))))))............................... (-15.06 = -13.25 +  -1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:24 2006