Locus 7414

Sequence ID 3R_DroMel_CAF1
Location 19,725,164 – 19,725,270
Length 106
Max. P 0.992293
window11986

overview

Window 6

Location 19,725,164 – 19,725,270
Length 106
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 67.96
Mean single sequence MFE -39.43
Consensus MFE -16.36
Energy contribution -16.95
Covariance contribution 0.59
Combinations/Pair 1.27
Mean z-score -2.51
Structure conservation index 0.41
SVM decision value 2.32
SVM RNA-class probability 0.992293
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19725164 106 + 27905053
CAAGACUGUUAUGCAACAGUGCUGUUUGCUGUUGCAGAUAGCCAGCAGGAUCGUCCUUAAAGUUUGGAUGUUGCUGUAGCGG------CUGCUGCUGUUG--GA-UGACUGUGUU
.((.((.(((((.((((((.(((((((((....)))))))))((((((...(((((.........)))))((((....))))------))))))))))))--.)-)))).)).)) ( -43.40)
>DroVir_CAF1 7382 83 + 1
CCAGCGUAUUGUGCAGCAGCGUUGUUUGCUGUUGCAGAUAGCCCGCGGGAUCAUCCUUGAAGUUGGGCUGC---------------------------UG--GGCUAACGGA---
(((((....(.((((((((((.....)))))))))).).((((((((((.....)))....).))))))))---------------------------))--).........--- ( -35.60)
>DroGri_CAF1 7460 95 + 1
CGAGUGUGUUGUGCAGGAGUGCCGUUUGCUGCUGCAAAUAGCCCGCCGGAUCAUCCUUGAAAUUGGGCUGCUGC-------G------CAGGUGGUGG-------UGGAGGAGGA
((.(((.(((((((((.(((.......))).)))))..)))).)))))..((.(((((.(...(.(.((((...-------)------))).).)...-------).))))).)) ( -29.30)
>DroEre_CAF1 5000 106 + 1
CAAGACUGUUAUGCAGCAGUGCUGUUUGCUGUUGCAGAUAGCCAGCGGGAUCGUCCUUGAAGUUGGGAUGUUGCUGUUGCGG------CUGCUGCUGUUG--GA-UGACUGUGUU
.((.((.((((((((((((((((((((((....)))))))))((((((.(.((((((.......)))))).).))))))..)------))))))).....--.)-)))).)).)) ( -44.70)
>DroWil_CAF1 10380 110 + 1
CCAGGGUGUUGUGCAGCAGAGUUGUCUGCUGCUGCAGAUAGCCAGCGGGAUCAUCCUUGAAAUUGGGUUGCUGA-GUAGGCGGAGUCG---CCACUGCUGCCGG-UGCCGGAGGC
....((..(((.(((((((.(((((((((....)))))))))(((((.....((((........))))))))).-...((((....))---)).))))))))))-..))...... ( -49.20)
>DroYak_CAF1 4500 91 + 1
CAAGGCUGGUGUGCAGCAGUGCUGUUUGCUGUUGCAGAUAGCCAGCAGGAUCGUCCUUAAAGUUGGG---------------------UUGCUGCUGUUG--GA-UGACUGUGAC
...(((((.(.(((((((((.......))))))))).)))))).((((..((((((....(((.(..---------------------...).)))...)--))-)))))))... ( -34.40)
>consensus
CAAGACUGUUGUGCAGCAGUGCUGUUUGCUGUUGCAGAUAGCCAGCGGGAUCAUCCUUGAAGUUGGGAUGCUGC_______G______CUGCUGCUGUUG__GA_UGACGGAGGC
......((((.((((((((((.....)))))))))))))).((((((((.....)))....)))))................................................. (-16.36 = -16.95 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:23 2006