Locus 7413

Sequence ID 3R_DroMel_CAF1
Location 19,721,131 – 19,721,225
Length 94
Max. P 0.686272
window11985

overview

Window 5

Location 19,721,131 – 19,721,225
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.79
Mean single sequence MFE -34.41
Consensus MFE -27.36
Energy contribution -28.17
Covariance contribution 0.81
Combinations/Pair 1.14
Mean z-score -1.49
Structure conservation index 0.80
SVM decision value 0.32
SVM RNA-class probability 0.686272
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19721131 94 + 27905053
----------------------UGCGGGUGUCGAGGAGGCUGAAAUGUUAUCCAACUCAGUCAUUGCUUCUUGUAUGGCCCGCUCGAGCUGCGAGUUCAGUUUGCGGCUCCU-UUGU---
----------------------.((((((..((((((((((((..((.....))..))))).....)))))))....))))))..((((((((((.....))))))))))..-....--- ( -36.30)
>DroPse_CAF1 2035 109 + 1
CGCUGUGGCUACGGA-------UGUGGGUGUCGAGGAGGCUGAAAUAUUAUCCAACUCAGUCAUUGCUUCUUGUAUAGCCCGCUCGAGUUGCGAGUUCAGUUUGCGGCUCCU-UUGU---
.((....))....((-------.((((((..((((((((((((.............))))).....)))))))....))))))))((((((((((.....))))))))))..-....--- ( -34.12)
>DroGri_CAF1 3110 93 + 1
-----------------------GAGG---UUGCCGAUGCUGAAAUGUUAUCCAACUCAGUCAUUGCUUCUUGUAUAGCCCGCUCGAGUUGCGAGUUCAAUUUGCGGCUCCU-UUUUUUU
-----------------------((((---..((((....((((......(((((((((((....(((........)))..))).)))))).)).)))).....)))).)))-)...... ( -24.70)
>DroWil_CAF1 6177 116 + 1
CGCUGUUG-UACCGGUGGCGACACCGGGCGACGAGGAGGCUGAAAUGUUAUCCAACUCAGUCAUUGCUUCUUGUAUAGCCCGCUCGAGUUGCGAGUUCAGUUUGCGGCUCCUUUUGU---
....((((-(.((((((....)))))))))))((((((.(((((((....(((((((((((....(((........)))..))).)))))).)).....)))).)))))))))....--- ( -43.80)
>DroAna_CAF1 2839 94 + 1
----------------------UGCGGGAGUCGAGGAGGCUGAAAUGUUAUCCAACUCAGUCAUUGCUUCUUGUAUGGCCCGCUCGAGUUGCGAGUUCAGUUUGCGGCUCCU-UUGU---
----------------------.(((((.((((((((((((((..((.....))..))))).....))))))).))..)))))..((((((((((.....))))))))))..-....--- ( -33.10)
>DroPer_CAF1 2041 109 + 1
CGCUGUGGCUACAGA-------UGUGGGUGUCGAGGAGGCUGAAAUAUUAUCCAACUCAGUCAUUGCUUCUUGUAUAGCCCGCUCGAGUUGCGAGUUCAGUUUGCGGCUCCU-UUGU---
.((....)).(((((-------.((((((..((((((((((((.............))))).....)))))))....))))))..((((((((((.....)))))))))).)-))))--- ( -34.42)
>consensus
______________________UGCGGGUGUCGAGGAGGCUGAAAUGUUAUCCAACUCAGUCAUUGCUUCUUGUAUAGCCCGCUCGAGUUGCGAGUUCAGUUUGCGGCUCCU_UUGU___
.......................((((((..((((((((((((.............))))).....)))))))....))))))..((((((((((.....)))))))))).......... (-27.36 = -28.17 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:22 2006