Locus 7409

Sequence ID 3R_DroMel_CAF1
Location 19,713,496 – 19,713,615
Length 119
Max. P 0.979049
window11974

overview

Window 4

Location 19,713,496 – 19,713,615
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.39
Mean single sequence MFE -26.76
Consensus MFE -22.66
Energy contribution -22.02
Covariance contribution -0.64
Combinations/Pair 1.10
Mean z-score -2.05
Structure conservation index 0.85
SVM decision value 1.83
SVM RNA-class probability 0.979049
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19713496 119 - 27905053
CUAUAAAGGGUAUGAAAAUCUUUAGCCCACUUAAUUCAAUUCCUGGGAUACCCUUUUUCCAGUUGGGUUAACAGAUGAUGACUAGUUACCGAUAACUGCUUUCUAU-UCCCCACCAUCAA
.......(((...((((((((((((((((.............((((((........)))))).)))))))).))))......((((((....)))))).))))...-.)))......... ( -24.84)
>DroSec_CAF1 25837 119 - 1
CUAUAAAGGGUAUGAAAAUCUUUAGCCUGCUUAAUUCAAUUCCUGGGAUACCCUUUUUCCAGUUGGGUUAACAGGUGAUGACUAGUUACCGAUAACUGCUUUCUAU-UCCCCACCAUCAA
.......(((...((((.((....(((((.(((((((((...((((((........))))))))))))))))))))...)).((((((....)))))).))))...-.)))......... ( -29.50)
>DroSim_CAF1 31583 119 - 1
CUAUAAAGGGUAUGAAAAUCUUUAGCCUGCUUAAUUCAAUUCCUGGGAUACCCUUUUUCCAGUUGGGUUAACAGAUGAUGACUAGUUACCGAUAACUGCUUUCUAU-UCCCCACCAUCAA
.......(((...((((.((.(((..(((.(((((((((...((((((........)))))))))))))))))).))).)).((((((....)))))).))))...-.)))......... ( -25.10)
>DroEre_CAF1 27013 119 - 1
CUAUAGAGGGUAUGC-AAUCUUUAGCCCACUUAAUUCAAUUCCUGGGAUACCCUUUUUCCAGUUGGGUUAACAGAUGAUGACUAGUUACCGAUAACUGCUUUCUAUUUCCCCACCAUCAA
..(((((((((....-.((((((((((((.............((((((........)))))).)))))))).)))).......(((((....)))))))))))))).............. ( -26.04)
>DroYak_CAF1 27395 115 - 1
CUAUAGAGGGUAUGCUAAUCUUUAGCCCA----AUUCAAUUCCUGGGAUACCCUUUUUCCAGUUGGGUUAACAGAUGAUGACUAGUUACCGAUAACUGCUUUCUAU-UCCCCACCAUCAA
..(((((((((......((((((((((((----(........((((((........))))))))))))))).)))).......(((((....))))))))))))))-............. ( -28.30)
>consensus
CUAUAAAGGGUAUGAAAAUCUUUAGCCCACUUAAUUCAAUUCCUGGGAUACCCUUUUUCCAGUUGGGUUAACAGAUGAUGACUAGUUACCGAUAACUGCUUUCUAU_UCCCCACCAUCAA
.......(((.......((((((((((((.............((((((........)))))).)))))))).))))((....((((((....))))))...))......)))........ (-22.66 = -22.02 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:12 2006