| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,711,949 – 19,712,041 |
| Length | 92 |
| Max. P | 0.688807 |
| Location | 19,711,949 – 19,712,041 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 68.82 |
| Mean single sequence MFE | -26.89 |
| Consensus MFE | -5.42 |
| Energy contribution | -5.95 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.20 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19711949 92 + 27905053 UCGGCGUGCAGACAAAUAAAUUUCCAAGCAUAAGGCAAACGG-------CCGCCUUGCAGCCACUGAAAGCUGAAAAUGCAAGCGCACAGCGGUGGCCA ..(((((((..................))))..(((.....)-------))))).....((((((....((((....(((....))))))))))))).. ( -26.67) >DroVir_CAF1 26959 83 + 1 AUAGCGUGCAGACAAAUAAAUUUUGAAGCAG---GCAA-CGCUGCCUGCCUGCCGUACGGCAACUGCAUGCAUGCCAUGCACAUACA------------ ...((((((((.((((.....))))..((((---(((.-...))))))).((((....)))).)))))))).(((...)))......------------ ( -33.40) >DroGri_CAF1 35147 81 + 1 AUGGCGUGCAGACAAAUAAAUUUUCAAGCGG---GCAA-CGCUGCCU--UUGCAGCA--ACAACUGCAUGCAUACAAUACACUCACACA---------- ...((((((((...................(---....-)(((((..--..))))).--....))))))))..................---------- ( -23.80) >DroSec_CAF1 24319 92 + 1 UCGGCGUGCAGACAAAUAAAUUUCCAAGCAGAAGGCAAACGG-------CCGCCUUGCAGCCACUGAAAGCUGAAAAUGCAACCGCACAGGGGUGACCA (((((...(((................((.....))....((-------(.((...)).))).)))...)))))...(((....)))...((....)). ( -24.60) >DroEre_CAF1 25473 85 + 1 UCGGCGUGCAGACAAAUAAAUUUCCAAGCAAAAGGCAAGCGU-------CCGCUGUGCAGCCACUG-------AAAAUGCAAGCGCACAGCGGUGGCCA ..(((......................((.....))...((.-------(((((((((.((...((-------......)).)))))))))))))))). ( -26.10) >DroYak_CAF1 25859 92 + 1 UCGGCGUGCAGACAAAUAAAUUUCCAAGCAGAAGGCGAGCGG-------CCGCUGUGCAGCCACUGAAAACUGAAAAUGCAAGCGCACAGCUGCGGCCA ..(((.((((.......................(((.....)-------))(((((((.((.....................)))))))))))))))). ( -26.80) >consensus UCGGCGUGCAGACAAAUAAAUUUCCAAGCAGAAGGCAA_CGG_______CCGCCGUGCAGCCACUGAAAGCUGAAAAUGCAAGCGCACAGCGGUGGCCA ...(((((((.................((.....))...............((......))................))))..)))............. ( -5.42 = -5.95 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:11 2006