Locus 7407

Sequence ID 3R_DroMel_CAF1
Location 19,700,310 – 19,700,401
Length 91
Max. P 0.622811
window11972

overview

Window 2

Location 19,700,310 – 19,700,401
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 89.41
Mean single sequence MFE -24.30
Consensus MFE -20.88
Energy contribution -20.85
Covariance contribution -0.03
Combinations/Pair 1.11
Mean z-score -1.58
Structure conservation index 0.86
SVM decision value 0.18
SVM RNA-class probability 0.622811
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19700310 91 - 27905053
UG----UGGGCGUGGUCGGGCAAGACAUUUGCCUUGGCCAUUUUAUGGCUUCAUUUCAAUUUAACAUUAAUUGGUGAAUGU---UGCUGAUUGUUGCU
..----..((((..(((((....((((((..((..((((((...)))))).......((((.......))))))..)))))---).)))))..).))) ( -25.20)
>DroSec_CAF1 12854 91 - 1
UG----UGGGCGUGGUCGGGCAAGACAUUUGCCUUGGCCAUUUUAUGGCUUCAUUUCAAUUUAACAUUAAUUGGUGAAUGU---UGCUGAUUGUUGCU
..----..((((..(((((....((((((..((..((((((...)))))).......((((.......))))))..)))))---).)))))..).))) ( -25.20)
>DroSim_CAF1 16265 91 - 1
UG----UGGGCGUGGUCGGGCAAGACAUUUGCCUUGGCCAUUUUAUGGCUUCAUUUCAAUUUAACAUUAAUUGGUGAAUGU---UGCUGAUUGUUGCC
..----..((((..(((((....((((((..((..((((((...)))))).......((((.......))))))..)))))---).)))))..).))) ( -26.50)
>DroEre_CAF1 13369 88 - 1
UG----UGGGCGUGGUCGGGCAAGACAUUUGCCUUGGCCAUUUUAUGGCUUCAUUUCAAUUUAACAUUAAUUGGUGAAUGU---U---CAUUGUUGCC
..----..((((((((((((((((...)))))).)))))))...((((((((((..(((((.......)))))))))).).---)---)))....))) ( -23.20)
>DroYak_CAF1 13617 88 - 1
UG----UGGGCGUGGUCGGGCAAUACAUUUGCCUUGGCCAUUUUAUGGCUUCAUUUCAAUUUAACAUUAAUUGGUGAAUGU---U---GAUUGUUGCC
..----..(((((((((((((((.....))))).)))))))...............(((((.((((((........)))))---)---)))))..))) ( -24.90)
>DroAna_CAF1 12673 94 - 1
UGUGUCUAGGCGUGACCAGGC----CUCUUGCCUUGGCCAUUUUAUGGCUUCAUUUCAAUUUGGCUUUAAUUGGUGAAUGUGAAUGUUCAUUGUUGCU
...((....))(..((.((((----(..(((....((((((...))))))......)))...))))).....(((((((......)))))))))..). ( -20.80)
>consensus
UG____UGGGCGUGGUCGGGCAAGACAUUUGCCUUGGCCAUUUUAUGGCUUCAUUUCAAUUUAACAUUAAUUGGUGAAUGU___UGCUGAUUGUUGCC
........(((((((((((((((.....))))).)))))))......(((((((..(((((.......)))))))))).))..............))) (-20.88 = -20.85 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:10 2006