Locus 7405

Sequence ID 3R_DroMel_CAF1
Location 19,689,302 – 19,689,402
Length 100
Max. P 0.927679
window11969

overview

Window 9

Location 19,689,302 – 19,689,402
Length 100
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 75.47
Mean single sequence MFE -21.58
Consensus MFE -11.16
Energy contribution -11.48
Covariance contribution 0.32
Combinations/Pair 1.16
Mean z-score -2.08
Structure conservation index 0.52
SVM decision value 1.18
SVM RNA-class probability 0.927679
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19689302 100 + 27905053
CUCAUUUUGUUGAAGGA-CAAAAUCCCUUAGCAGAUGUGUCCA-AUCAUUAGAAGUUAGGAAACAAAAUGAGCAACACAAUA--GUUUAAUGGCUGCAUUUUAA
(((((((((((...(((-((..(((........))).))))).-.((....))........)))))))))))........((--(((....)))))........ ( -20.00)
>DroSec_CAF1 1997 101 + 1
CUCAUUUUGUUAAGGGG-CAAACCCCCAUAGCAGAUGUGUCCAAAACAUUAAAAGUUAGGCCACAAAAUGAGCCACACAAUU--GCUUAAUGGCUACAUUCUAA
.....(((((((.((((-.....)))).)))))))((((.((..(((.......))).)).)))).(((((((((.......--......))))).)))).... ( -24.82)
>DroSim_CAF1 2012 102 + 1
CUCAUUUUGUUAAGGGA-CAAACCCCCAUAGCAGAUGUGUCCA-AACAUUAAAAGUUAGGUAACAAAAUGAGCCACACAAUAAGGUUUAAUGGCUUCAUUCUAA
.(((((((((((.(((.-....)))((.((((.(((((.....-.)))))....)))))))))))))))))((((.((......))....)))).......... ( -23.50)
>DroEre_CAF1 2021 85 + 1
CUCAUUUUGUUAAGGGAACCAA--CCCAUAGCAGAUG--UCUA-AUCAUUAGAUGUCAGAAAGUAAAAUA-GC---UU----------AAUGGCUGCAUUAUAA
.((....(((((.(((......--))).)))))((((--((((-.....)))))))).))..((((..((-((---(.----------...)))))..)))).. ( -21.00)
>DroYak_CAF1 2027 88 + 1
CUCAUUUUGUUAGGGGAACAAA--CCCGUGGCAGCUG--UCCG-AUCGUUAGAAGUUUGAAAACAAAAUGAGCCACAC----------AAU-UCUGCAUUCUAA
(((((((((((.(((.......--)))(.(((....)--))).-.................)))))))))))......----------...-............ ( -18.60)
>consensus
CUCAUUUUGUUAAGGGA_CAAA__CCCAUAGCAGAUGUGUCCA_AUCAUUAGAAGUUAGGAAACAAAAUGAGCCACACAAU___G_UUAAUGGCUGCAUUCUAA
((((((((((((.(((........))).)))).((((.........))))..............))))))))................................ (-11.16 = -11.48 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:07 2006