| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,687,755 – 19,687,869 |
| Length | 114 |
| Max. P | 0.600025 |
| Location | 19,687,755 – 19,687,869 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 81.70 |
| Mean single sequence MFE | -33.70 |
| Consensus MFE | -24.18 |
| Energy contribution | -24.38 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.600025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19687755 114 - 27905053 GCUUUUCAACUAUUGUAGAUCUAUGACGAAUGCAACAUUCUGCAGGAUGGCACACUUAUUGAUCUCUGCGGCGCAACCUUGCUUUGGCGUUCCGCCGAGGGCUUGCAGCAUUCG .....((.((....)).)).......(((((((......(((((((((.(.........).))).)))))).(((((((....((((((...))))))))).)))).))))))) ( -32.80) >DroVir_CAF1 463 109 - 1 AUUAUGUUUGC-----AGAUCUACGAUGAAUGCAACAUCUUGCAGGAUGGCACACUCAUUGAUCUCUGCGGCGCAACGUUGCUCUGGCGUUCCGCCGAGGGAUUGCAACAUUCA ...(((((.((-----((.....((((((.((...(((((....)))))...)).)))))).(((((.(((((.((((((.....)))))).)))))))))))))))))))... ( -39.70) >DroGri_CAF1 1813 107 - 1 --GUUUCACAC-----AGAUCUAUGAUGAGUGUAAUAUCUUGCAGGAUGGCACACUCAUUGAUCUCUGCGGCGCAACGCUGCUCUGGCGUUCCGCCGAGGGCUUGCAACAUUCA --(((.((((.-----(((((...(((((((((..(((((....)))))..)))))))))))))).))(((((.((((((.....)))))).)))))......)).)))..... ( -40.40) >DroWil_CAF1 550 114 - 1 AAUGUUAAUAUAUUACAGAUCUACGAUGAAUGCAACAUCCUGCAGGAUGGCACACUUAUUGAUCUCUGUGGAGCAACGCUUCUUUGGCGUUCAGCUGAGGGCUUACAACACUCA ............(((((((....((((((.((...(((((....)))))...)).))))))...)))))))(((((((((.....))))))..)))((((........).))). ( -29.60) >DroMoj_CAF1 2489 107 - 1 --CAUUUGCCC-----AGAUCUAUGAUGAAUGCAACAUAUUGCAGGAUGGCACACUCAUUGAUCUCUGCGGCGCAACGCUGCUCUGGCGCUCCGCCGAGGGUUUGCAGCAUUCA --...((((((-----(((((.((((((..(((((....)))))......))...)))).)))))....)).)))).(((((...(((.(((....))).))).)))))..... ( -31.40) >DroAna_CAF1 479 109 - 1 AUCUUCCUCUC-----AGAUCUAUGAUGAAUGCAACAUCUUGCAGGAUGGCACCCUAAUUGAUCUCUGCGGCGCAACUUUGCUCUGGCGUUCCGCCGAGGGCUUGCAACACUCU .....((.(..-----(((((.((...(..(((..(((((....))))))))..)..)).)))))..).)).((((....(((((((((...)))).)))))))))........ ( -28.30) >consensus A_UUUUCACAC_____AGAUCUAUGAUGAAUGCAACAUCUUGCAGGAUGGCACACUCAUUGAUCUCUGCGGCGCAACGCUGCUCUGGCGUUCCGCCGAGGGCUUGCAACAUUCA ................(((((.((((.(..(((..(((((....))))))))..))))).)))))((.(((((.((((((.....)))))).))))).)).............. (-24.18 = -24.38 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:06 2006