| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,655,737 – 19,655,842 |
| Length | 105 |
| Max. P | 0.739913 |
| Location | 19,655,737 – 19,655,842 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 83.53 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -17.68 |
| Energy contribution | -17.48 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19655737 105 + 27905053 UUUGCCCAUGGCAUUAAGGUGAGUUUUAUACUUCAUAUAAAUACUGCCUUCUUGGGCAACAUAAGCUUUGCGAAAUUUUGCGUAAUAAGUAAUGCUAUUAUUUUA----- .(((((((.((((.((..((((((.....)).)))).....)).))))....)))))))....(((.((((...(((......)))..)))).))).........----- ( -23.50) >DroSec_CAF1 39809 107 + 1 UUUGCCCAUGGCAUCAAGGUGAGUUUUAUAUUUCAUAUAAAUACUGCCUGCUUGGGCAACAUAAGCUUUGCGA-AUUUUGCGUAAUAAGUAAUGCUAUUAUGUUU--UUU ..((((((.((((....(((.((((((((((...))))))).))))))))))))))))((((((((.((((..-(((......)))..)))).)))..)))))..--... ( -27.80) >DroSim_CAF1 40058 110 + 1 UUUGCCCAUGGCAUCAAGGUGAGUUUUAUAUUUCAUAUAAAUACUGCCUGCUUGGGCAACAUAAGCUUUGCGAAAUUUUGCGUAAUAAGUAAUGCUAUUAUGUUUUUUUU ..((((((.((((....(((.((((((((((...))))))).))))))))))))))))((((((((.((((...(((......)))..)))).)))..)))))....... ( -26.90) >DroEre_CAF1 39959 109 + 1 UUUGCCCAUGGCAUCAAGGUGAGUUUUACAUUUCAUAUAAGUACUGCCUUUUUUGGCAAGUUAAGCUUUGCCAAAUUGGGCACAAUAAGAAGUGCUCUUAGGAUUU-UUC ..((((((.((((.....(((((........)))))........))))...(((((((((......))))))))).))))))...(((((.....)))))......-... ( -29.12) >DroYak_CAF1 40325 105 + 1 UUUGCUCAUGGCAUCAAGGUGAGUUUUACAUUUCAUAUAAAUACCGCCUUUUCGGGUAGCUUAAGCUCUGCGAGAUUUUAUAUUAUAA----UGCUAUUAUGAUUU-UUG .......(((((((..(((((.((((((.........)))).)))))))(((((.(.(((....))).).)))))............)----))))))........-... ( -18.70) >consensus UUUGCCCAUGGCAUCAAGGUGAGUUUUAUAUUUCAUAUAAAUACUGCCUUCUUGGGCAACAUAAGCUUUGCGAAAUUUUGCGUAAUAAGUAAUGCUAUUAUGUUUU_UUU .(((((((.((((.....(((((........)))))........))))....)))))))....(((..(((((....)))))...........))).............. (-17.68 = -17.48 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:45:00 2006