Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,631,572 – 2,631,672 |
Length | 100 |
Max. P | 0.658069 |
Location | 2,631,572 – 2,631,672 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -15.05 |
Energy contribution | -15.55 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.30 |
Mean z-score | -1.77 |
Structure conservation index | 0.66 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658069 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2631572 100 + 27905053 ACUUAAGCU-C-UUUGUAUUAGUUGUAAGACA-------GUAGUUAAAAGAGAGUACAAUUUAAAAGCUAAUGUUGCAGAUACCAUUUCUGUUUUGGAGCGAUUUCUUU ......(((-(-(...((((((((...(((..-------(((.((......)).)))..)))...))))))))..(((((.......)))))...)))))......... ( -19.10) >DroSec_CAF1 31742 101 + 1 ACUUCAGUU-UUUCUCUAUAACUUGUAAGACA-------GUAGUUAAUAGAGAAUACAAUUUAAAAGCUGAUGUUGCAGAAACCAUUUCUGUUUUGGAGCGGUUUCUUU ((.((((((-(((((((((((((((.....))-------..)))).)))))))..........)))))))).))...(((((((.((((......)))).))))))).. ( -25.60) >DroSim_CAF1 19953 109 + 1 ACUUCAGCUUUUUUUGUAUAACUUGUAAGACAAUAGUGAGUAGUUAAAAGAGAAUACAAUUUAAAAGCUGAUUUUGCAGAAACCAUUUCUGUUUUGGAGCGGUUUCUUU ...(((((((((.((((((..(((.(((.((........))..)))...))).))))))...)))))))))......(((((((.((((......)))).))))))).. ( -26.90) >DroYak_CAF1 13709 100 + 1 AAUUUAGAG-C-UUUGUAUUAGUUUUAAGACU-------GCAGUUAAAAGACGGUACAAUUUAACAUCUGAUGUUGCAGAAACCAUUUUUGUUUUGAAACGGUUUCUUU ...(((((.-.-.(((((((.(((((..(((.-------...)))..)))))))))))).......)))))......(((((((.((((......)))).))))))).. ( -19.90) >consensus ACUUCAGCU_C_UUUGUAUAACUUGUAAGACA_______GUAGUUAAAAGAGAAUACAAUUUAAAAGCUGAUGUUGCAGAAACCAUUUCUGUUUUGGAGCGGUUUCUUU ...((((((....(((((((.(((....(((...........)))....))))))))))......))))))......(((((((.((((......)))).))))))).. (-15.05 = -15.55 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:45 2006