Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 491,444 – 491,535 |
Length | 91 |
Max. P | 0.744068 |
Location | 491,444 – 491,535 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 78.25 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -18.39 |
Energy contribution | -19.62 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.22 |
Mean z-score | -1.80 |
Structure conservation index | 0.58 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 491444 91 + 27905053 GAAGGUCAAACUGGGGCG---UGGGGUUGGGGGUCACAUGUCGAAGUCGGUUCGGGGG-AACCGUA--AAACCAGAUCU---UGCCAGAGACCUUCGCG----U (((((((...((((((((---((((.(....).)).)))))).....((((((....)-)))))..--...)))).(((---....))))))))))...----. ( -33.10) >DroVir_CAF1 21355 93 + 1 GAAGGUCAAC----GGCG---U---CUCUGGGGUCACAUGUCAAUGUCGAUUUAUAGA-AGGCGUUAUAAACCAGAUCUCGAUGCCUGCAACCUUCGAGCUUUU ((((((....----((((---(---((((((.(((((((....)))).)))((((((.-.....)))))).)))))....))))))....))))))........ ( -28.40) >DroSec_CAF1 19440 91 + 1 GAAGGUCAAACUGGGGCG---UGGGGUUGGGGGUCACAUGUCAAAGUCGAUUCGGGGG-AACCGUA--AAACCAGAUCU---UGCCAGAGACCUUCGCG----U (((((((...((((.(..---.((..(((((((((((........)).))))).((..-..))...--...))))..))---).)))).)))))))...----. ( -29.20) >DroSim_CAF1 18921 91 + 1 GAAGGUCAAACUGGGGCG---UGGGGUUGGGGGUCACAUGUCAAAGUCGAUUCGGGGG-AACCGUA--AAACCAGAUCU---UGCCAGAGACCUUCGCG----U (((((((...((((.(..---.((..(((((((((((........)).))))).((..-..))...--...))))..))---).)))).)))))))...----. ( -29.20) >DroEre_CAF1 21423 89 + 1 GAAGGUCAAACUGGGGUC---UGGGG-UGGGGGUCACGUGUUAAAGUUGAUUCAGG-G-AACCUUA--AAACCAGAUCU---UGCCAUAGACCUUCGCG----U (((((((.....((((((---(((..-(..((((..(.((............)).)-.-.))))..--)..))))))))---)......)))))))...----. ( -32.80) >DroAna_CAF1 20258 95 + 1 GAAGGUCAUACAUGGGCUCUUGGGGGUUGGGGGUCACAUGUCAAAGUCGAUUUGGGGGCAACUCUA--AAACCAGAUCC---CCCAAAAGACCUUCGCU----A (((((((..(((((((((((..(...)..)))))).))))).........((((((((....(((.--.....))).))---)))))).)))))))...----. ( -38.60) >consensus GAAGGUCAAACUGGGGCG___UGGGGUUGGGGGUCACAUGUCAAAGUCGAUUCGGGGG_AACCGUA__AAACCAGAUCU___UGCCAGAGACCUUCGCG____U (((((((.......((((....(((.(((((((((((........)).)))))((......))........)))).)))...))))...)))))))........ (-18.39 = -19.62 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:23 2006