Locus 7397

Sequence ID 3R_DroMel_CAF1
Location 19,646,561 – 19,646,654
Length 93
Max. P 0.890613
window11954

overview

Window 4

Location 19,646,561 – 19,646,654
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -11.65
Consensus MFE -7.47
Energy contribution -7.47
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.64
SVM decision value 0.96
SVM RNA-class probability 0.890613
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19646561 93 + 27905053
AUGGGCAUAGCCCAAAAUAAAACUUUUUCGUUUCUUUUUUA--CCGUUUA-UUUAACACAAUCAAUUAAAAUAAAACCA-AACACAAGAUUUACUCA
.(((((...)))))...............((.((((.....--...((((-(((..............)))))))....-.....))))...))... (  -9.17)
>DroPse_CAF1 45124 88 + 1
AUGGGCCUAGCCCAAAUAAAAAC-UUUUCGUUUGUUUUUUAAAUAGUUUA-UUUAACAACACC---CAAAACAAAA----AAAAAAACGUUUACUCA
.(((((...))))).....((((-((((..((((((((.......(((..-...)))......---.)))))))).----.))))...))))..... ( -12.94)
>DroSim_CAF1 30961 93 + 1
AUGGGCCUAGCCCAAAAUAAAACUUUUUCGUUUCUUUUGUA--CCGUUUA-UUUAACACAAUCAAUUAAAAUAAAACCA-AACACAAGAUUUACUCA
.(((((...)))))...............((.((((.(((.--...((((-(((..............)))))))....-.))).))))...))... ( -12.44)
>DroEre_CAF1 30802 95 + 1
AUGGGCCUAGCCCAAAAUAAAACUUUUUCGUUUAAUUUUCA--CCGUUUUUUUUAACACAAUCAAGUAAAACAUAACCAAAACACAAGAUUUACUUU
.(((((...)))))((((.((((......)))).))))...--..(((......)))......(((((((.(...............).))))))). ( -10.26)
>DroYak_CAF1 31027 94 + 1
AUGGGCCUAGCCCAAAAUAAAACUUUUUCGUUAAAUUUUCA--ACGUUUA-UUUAACACAAUCAAUUAAAACAUAAUCAAAACACAAGAUUUACUUG
.(((((...)))))...............(((((((.....--......)-))))))...........................((((.....)))) ( -11.60)
>DroPer_CAF1 44745 85 + 1
AUGGGCCUAGCCCAAAUAAAAAC-UUUUCGUUUGUUUUUUAAAUAGUUUA-UUUAACAACACC---CAAA-C--AA----AAAAAAACGUUUACUCA
.(((((...))))).....((((-((((..(((((((........(((..-...)))......---.)))-)--))----)..)))).))))..... ( -13.46)
>consensus
AUGGGCCUAGCCCAAAAUAAAACUUUUUCGUUUAUUUUUUA__CCGUUUA_UUUAACACAAUCAAUUAAAACAAAACCA_AACACAAGAUUUACUCA
.(((((...)))))...............................(((......)))........................................ ( -7.47 =  -7.47 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:52 2006