Locus 7395

Sequence ID 3R_DroMel_CAF1
Location 19,642,113 – 19,642,203
Length 90
Max. P 0.907007
window11951

overview

Window 1

Location 19,642,113 – 19,642,203
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 74.75
Mean single sequence MFE -40.22
Consensus MFE -14.80
Energy contribution -14.30
Covariance contribution -0.50
Combinations/Pair 1.33
Mean z-score -2.45
Structure conservation index 0.37
SVM decision value 1.05
SVM RNA-class probability 0.907007
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19642113 90 + 27905053
AUUGGUAUAUAGGUGGCGGAAAUGUAGGGUC---CACC---------CGCAUUUCCGCCGGCAGGUGCGAUCAGGCCAGCUGAUUGUUGAAAGUGGGGUGGU
....((((...(.((((((((((((.(((..---..))---------))))))))))))).)..))))......((((.((.(((......))).)).)))) ( -39.20)
>DroVir_CAF1 31375 102 + 1
AACGGCAUAUAGGUUGCCGAUAUAUAGGUGGCCGUGCCAGUUCCACCCCCAUUAGCGCCGGCCGGUGCGAUCAUGCCAGCUGAUUGCGAAAAGUGCGGCGGC
...(((((...(((..((........))..)))))))).................(((((..(..((((((((.(....)))))))))....)..))))).. ( -37.30)
>DroGri_CAF1 31494 96 + 1
AAGGGCAAAUACGUGGCCGAAAUGUAGGCGG---UGCCGGGCCCACCAGCAUUGCCGGUGGGCGGCGCGAUCAGGCCAGCUGAUUGCGAGAAAU---GCGGC
....((...(((((.......))))).))..---.((((.(((((((.((...)).)))))))..(((((((((.....)))))))))......---.)))) ( -41.60)
>DroSec_CAF1 26397 90 + 1
AUUGGUAUAUAAGUGGCGGAAAUGUAGGGUC---CACC---------CGCAUUUCCGCCGGCAGGUGCGAUCAGGCCAGCUGAUUGUUGAAAGUGGGGUGGU
.(((((.......((((((((((((.(((..---..))---------)))))))))))))((....)).)))))((((.((.(((......))).)).)))) ( -37.50)
>DroEre_CAF1 26401 96 + 1
AAGGGUAUAUAGGCUGCGGACAUGUAGGGGG---CACCCGCACCAC---CAUUUCCGCCGGCAGGUGCGAUCAGGCCAGCUGAUUGUGGGAAGUGGGGUGGU
..((((.......(((((....)))))....---.)))).((((.(---((((((((((....)))((((((((.....)))))))).)))))))))))).. ( -40.30)
>DroYak_CAF1 26597 99 + 1
AAGGGUAUAUAGGCUGCGGAAAUAUAGGGAG---CAGCCGCUCCGCCCGCAUUUCCGCCGGCAGGUGCGAUCAGGCCAGCUGAUUGUGGGAAGUGGGGUGGU
...........((((((.............)---)))))...((((((.((((((((((....)))((((((((.....)))))))).))))))))))))). ( -45.42)
>consensus
AAGGGUAUAUAGGUGGCGGAAAUGUAGGGGG___CACC_G__CCAC_CGCAUUUCCGCCGGCAGGUGCGAUCAGGCCAGCUGAUUGUGGAAAGUGGGGUGGU
..................................((((..................(((....)))((((((((.....)))))))).........)))).. (-14.80 = -14.30 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:50 2006