Locus 7393

Sequence ID 3R_DroMel_CAF1
Location 19,633,118 – 19,633,214
Length 96
Max. P 0.640426
window11949

overview

Window 9

Location 19,633,118 – 19,633,214
Length 96
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 83.63
Mean single sequence MFE -31.55
Consensus MFE -23.62
Energy contribution -24.29
Covariance contribution 0.67
Combinations/Pair 1.17
Mean z-score -1.87
Structure conservation index 0.75
SVM decision value 0.22
SVM RNA-class probability 0.640426
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19633118 96 - 27905053
GAGCAUAUUCGCGAAAAACAGCAGGAUCAGGCACCU---CCAAUAGCUCCCCGUUCGGUGCUCGGUUCUGUUGAACUUAAGCGAAAGCUCU-UCAAGAUC
((((...(((((......((((((((((..(((((.---.................)))))..)))))))))).......))))).)))).-........ ( -34.09)
>DroSec_CAF1 17447 97 - 1
GAGCAUAUUCGCGAGAAGCAGCAGAAUCCGGCACCU---CCAAUAGCUCCCCGUUCGGUGCUCGGUUCCGUUGAACUUAAGCGAAAGCUCUUUCAAGAUC
((((...(((((...(((((((.(((((.((((((.---.................)))))).))))).))))..)))..))))).)))).......... ( -31.47)
>DroSim_CAF1 17455 96 - 1
GAGCAUAUUCGCGAGAAGCAGCAGGAUCCGGCACCU---CCAAUAGCUCCUCGUUCGGUGCUCGGUUCCGUUGAACUUAAGCGAAAGCUCU-UCAAGAUC
((((...(((((...(((((((.(((.((((((((.---.................))))).))).)))))))..)))..))))).)))).-........ ( -33.17)
>DroEre_CAF1 17330 96 - 1
GAGCAUAUUCGCGAGAAGCAGCAGGAUCAGGCACCA---CCAGUAGCUCCCCGGGCGGUGCUCGGUUCCGUGGAACUGAAGCGAAAGCUCU-UUAAGAUC
..((...(((....)))...))..((((..(((((.---((.(........).)).)))))(((((((....)))))))(((....)))..-....)))) ( -33.90)
>DroYak_CAF1 17501 96 - 1
GAGCAUAUUCGCGAGAAGCAGCAGGAUCAAGCACCU---CCAGUAGCUUCACGUGCGGUGCUCGGUUCCGUUGACCUCAAGCGAAAGCUCU-UUAAGAUA
((((...(((((..((.(((((.(((((.((((((.---...((......))....)))))).))))).)))).).))..))))).)))).-........ ( -33.80)
>DroAna_CAF1 16835 99 - 1
GAGCACAUGCGUGAAAAGCAGCAUGAUCAGAGUCCUGAACCUAUCAUCUCUCGACCUGUUAUCGGUUCGGUGGAACUCAAACGAAAACUGU-UCAAGAUC
((((((((((((.....)).)))))....((((((((((((......................))))))..)).))))..........)))-))...... ( -22.85)
>consensus
GAGCAUAUUCGCGAGAAGCAGCAGGAUCAGGCACCU___CCAAUAGCUCCCCGUUCGGUGCUCGGUUCCGUUGAACUUAAGCGAAAGCUCU_UCAAGAUC
((((...(((((......((((.(((((.((((((.....................)))))).))))).)))).......))))).)))).......... (-23.62 = -24.29 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:47 2006