Locus 7392

Sequence ID 3R_DroMel_CAF1
Location 19,632,625 – 19,632,740
Length 115
Max. P 0.531445
window11948

overview

Window 8

Location 19,632,625 – 19,632,740
Length 115
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 79.28
Mean single sequence MFE -34.57
Consensus MFE -18.38
Energy contribution -17.38
Covariance contribution -1.00
Combinations/Pair 1.40
Mean z-score -1.85
Structure conservation index 0.53
SVM decision value -0.00
SVM RNA-class probability 0.531445
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19632625 115 + 27905053
UCCUUCAUGUUUUCGGUCAACAAUUUGGCCACUUUGGUCAAGUUGCUGUUUUCCGUACGCAGCGCUUCAUUCUCCUCCUCCAUGGCGUGUUGCUAAA-ACGAGAAUGAGAAAAAAA
((.(((.(((((((((.((.((((((((((.....)))))))))).))....)))...(((((((.((((...........)))).))))))).)))-))).))).))........ ( -33.40)
>DroVir_CAF1 21608 115 + 1
UCCUUCAUGUUGUCGGUCAACAGUUUGGCCACCUUGGUUAGAUUGCCGUUCUCGGUGCGCAGCGUUUCGUUCUCCUCCUCCAGCAAAUGUUGCUACA-AUAAGAAGCAGAGCGUUA
..((((.((((((.......((((((((((.....))))))))))(((....)))...(((((((((.(((..........)))))))))))).)))-))).)))).......... ( -29.90)
>DroPse_CAF1 27793 115 + 1
UCCUUCAUGUUCUCCGUCAGCAGCUUGGCCACCUUGGUCAGGUUGCUGUUCUCCGAGCGCAGCGUCUCGUUCUCCUCCUCCAGCGAGUGUUGCUAUCCACCGGAGAAAGCAGU-AA
.........(((((((.(((((((((((((.....)))))))))))))......((..((((((.((((((..........))))))))))))..))...)))))))......-.. ( -46.10)
>DroEre_CAF1 16834 115 + 1
UCCUUCAUGUUUUCGGUCAACAGUUUAGCCACCUUGGUCAAGUUACUAUUUUCCGUUCGCAGCGCUUCAUUUUCCUCGUCCAUUGCGUGUUGCUAUG-ACAGGAAUGAGAAAAUAA
(((((((((....(((..((.(((...(((.....)))......))).))..)))...(((((((..((..............)).)))))))))))-).))))............ ( -21.74)
>DroYak_CAF1 17076 109 + 1
UCCUUCAUGUUUUCGGUCAGCAGCUUGGCCACUUUGGUUAAGUUACUGUUUUCCGUACGCAGCGCUUCGUUUUCCUCCUCCAUUGCGUGUUGCUA-------GAAUAAGAAAAGAA
...(((.(((((((((.(((.(((((((((.....))))))))).)))....)))...(((((((.....................))))))).)-------))))).)))..... ( -28.30)
>DroPer_CAF1 28797 115 + 1
UCCUUCAUGUUCUCCGUCAGCAGCUUGGCCACCUUGGUCAGGUUGCUGUUCUCCGAGCGCAGCGUCUCGUUCUCCUCCUCCAGCGAGUGUUGCUAUCCACCGGAGGAAGCAGU-AA
((((((..((((.....(((((((((((((.....)))))))))))))......))))((((((.((((((..........))))))))))))........))))))......-.. ( -48.00)
>consensus
UCCUUCAUGUUUUCGGUCAACAGCUUGGCCACCUUGGUCAAGUUGCUGUUCUCCGUGCGCAGCGCUUCGUUCUCCUCCUCCAGCGAGUGUUGCUAUA_ACAGGAAUAAGAAAA_AA
...........(((......((((((((((.....)))))))))).............(((((((.....................))))))).........)))........... (-18.38 = -17.38 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:46 2006