Locus 7391

Sequence ID 3R_DroMel_CAF1
Location 19,632,203 – 19,632,296
Length 93
Max. P 0.741984
window11947

overview

Window 7

Location 19,632,203 – 19,632,296
Length 93
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 76.27
Mean single sequence MFE -15.57
Consensus MFE -12.71
Energy contribution -12.38
Covariance contribution -0.33
Combinations/Pair 1.31
Mean z-score -0.89
Structure conservation index 0.82
SVM decision value 0.45
SVM RNA-class probability 0.741984
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19632203 93 - 27905053
U-CAAUCUAUCUAUUCUGU-CCAU--CUGUC---AAUCCAUUAGCAAACACGCAGCGUGUUUGACAUUUUCAAGCCGUUCUCGAAUAUCUUCAAGAGCAA
.-.................-....--.....---.........(((((((((...)))))))).)...........(((((.(((....))).))))).. ( -15.10)
>DroVir_CAF1 20506 94 - 1
UCCUAUUUAUCUAUCCCAUU-UGU--AUUUC---CGUCUCAAAGCAAACACGCAGCGUGUUUGACAUAUUCAAGCCGUUUUCGAGUAUAUUUAAGAGCAA
....................-...--.....---.(.(((...(((((((((...)))))))).)((((((...........))))))......)))).. ( -14.20)
>DroEre_CAF1 16414 95 - 1
U-CAAACUAUCUAUUCUGU-CCCUCUCUGUC---CAUCCAUUAGCAAACACGCAGCGUGUUUGAUAUUUUCAAGCCGUUCUCGAAUAUCUUCAAGAGCAA
.-.................-...........---..........((((((((...)))))))).............(((((.(((....))).))))).. ( -14.90)
>DroYak_CAF1 16661 93 - 1
U-CAAACUAUCUCUUCUGU-CCAU--CUGUC---AAUCCAUUAGCAAACACGCAGCGUGUUUGAUAUUUUCAAGCCGUUCUCGAACAUCUUUAAGAGCAA
.-.................-....--.....---..........((((((((...)))))))).............(((((..((....))..))))).. ( -14.00)
>DroMoj_CAF1 19520 84 - 1
UCCC-UCUAUCUACCCAACU------AU---------UCAAUAGCAAACACGUAGCGUGUUUGACAUAUUCAAGCCGUUGUCGAGCAUAUUCAAGAGCAA
...(-(((............------..---------..((((.((((((((...))))))))...))))...((((....)).)).......))))... ( -15.40)
>DroAna_CAF1 16048 96 - 1
U-CAAAGUAUCUAUUCUAU-CCAU--CUAUUAUGACUCCAUUAGCAAUCACGGAGCGUGUUCGAUGUAUUCAAGCCGCUCUCGAAUUUCUUCCGGAGCAA
.-.................-....--......((.((((...((.(((..(((((((.(((.((.....)).)))))))).)).))).))...)))))). ( -19.80)
>consensus
U_CAAACUAUCUAUUCUAU_CCAU__CUGUC___AAUCCAUUAGCAAACACGCAGCGUGUUUGACAUAUUCAAGCCGUUCUCGAAUAUCUUCAAGAGCAA
............................................((((((((...)))))))).............(((((.(((....))).))))).. (-12.71 = -12.38 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:45 2006