Locus 7390

Sequence ID 3R_DroMel_CAF1
Location 19,630,483 – 19,630,582
Length 99
Max. P 0.871111
window11946

overview

Window 6

Location 19,630,483 – 19,630,582
Length 99
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 95.51
Mean single sequence MFE -23.07
Consensus MFE -20.47
Energy contribution -20.47
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.45
Structure conservation index 0.89
SVM decision value 0.87
SVM RNA-class probability 0.871111
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19630483 99 + 27905053
GACAUCAUUAUUCAAAUAUGUAUUGAUGAUAA-----CAUUCGUACAGCAUUUAAAUGCUAAAACGGAGCAUCGUGCUCCCUGUGCUAAUAAUUCCAAUUGAUA
..(((((.(((........))).)))))....-----.....(((((((((....))))).....(((((.....)))))..)))).................. ( -22.70)
>DroSec_CAF1 14845 104 + 1
GACAUCACUAUUCAAAUAUGUAUUGAUGAUAACGAUACAUUCGUACAGCAUUUAAAUGGUAAAACGGAGCAUCGUGCUCCCUGUGCUAAUAAUUCCAAUUGAUA
...........((((..((((((((.......))))))))..(((((((((....))).......(((((.....)))))))))))............)))).. ( -22.60)
>DroSim_CAF1 14837 104 + 1
GACAUCACUAUUCAAAUAUGUAUUGAUGAUAACGAUACAUUCGUACAGCAUUUAAAUGCUAAAACGGAGCAUCGUGCUCCCUGUGCUAAUAAUUCCAAUUGAUA
...........((((..((((((((.......))))))))..(((((((((....))))).....(((((.....)))))..))))............)))).. ( -23.90)
>consensus
GACAUCACUAUUCAAAUAUGUAUUGAUGAUAACGAUACAUUCGUACAGCAUUUAAAUGCUAAAACGGAGCAUCGUGCUCCCUGUGCUAAUAAUUCCAAUUGAUA
..(((((.(((........))).)))))..............(((((((((....))).......(((((.....))))))))))).................. (-20.47 = -20.47 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:44 2006