Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,630,760 – 2,630,874 |
Length | 114 |
Max. P | 0.999813 |
Location | 2,630,760 – 2,630,874 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 97.89 |
Mean single sequence MFE | -32.18 |
Consensus MFE | -30.46 |
Energy contribution | -30.70 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.85 |
Structure conservation index | 0.95 |
SVM decision value | 4.14 |
SVM RNA-class probability | 0.999813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2630760 114 - 27905053 GGAAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGGCCCACUGUCUCAACCCUUUGAUUAGAGCCUA ((..........((((((((((((((.....................)))))))))))).)).(((((((((....((..(((....)))..))...)))))))))....)).. ( -29.20) >DroSec_CAF1 30868 114 - 1 GGCAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGGCCCACUGUCUCAACCCUUUGAUUAGAGCCUA (((.........((((((((((((((.....................)))))))))))).)).(((((((((....((..(((....)))..))...)))))))))...))).. ( -33.20) >DroSim_CAF1 19095 114 - 1 GGCAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGGCCCACUGUCUCAACCCUUUGAUUAGAGCCCA (((.........((((((((((((((.....................)))))))))))).)).(((((((((....((..(((....)))..))...)))))))))...))).. ( -32.80) >DroEre_CAF1 20525 114 - 1 GGCAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGACCCACUGUCUCAACCCUUUGAUUAGAGCCUA (((.........((((((((((((((.....................)))))))))))).)).(((((((((......)))(((.....)))........))))))...))).. ( -31.60) >DroYak_CAF1 13007 114 - 1 GGCAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGGCCCACUGCGUUAACCCUUUGAUUAGAGCCUA (((.........((((((((((((((.....................)))))))))))).)).(((((((((....(((.(((....))).)))...)))))))))...))).. ( -34.10) >consensus GGCAUAUUUUACCUUUGGGAUAAUCCAGUCUCAUCCUCUUUCAUCCAGGAUUAUCCCAACAGAAGUCAAGGGACACGGCCCGGCCCACUGUCUCAACCCUUUGAUUAGAGCCUA (((.........((((((((((((((.....................)))))))))))).)).(((((((((....((..(((....)))..))...)))))))))...))).. (-30.46 = -30.70 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:44 2006