| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,624,985 – 19,625,076 |
| Length | 91 |
| Max. P | 0.950893 |
| Location | 19,624,985 – 19,625,076 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.08 |
| Mean single sequence MFE | -35.04 |
| Consensus MFE | -22.26 |
| Energy contribution | -20.43 |
| Covariance contribution | -1.83 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.950893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19624985 91 + 27905053 ------------------------AGCAAUUCAGCUUCAUCGCUUGCGGGCACCAGAUAGUUUGAAAGCGCUGCAGGAACACCUGGAGCGUUGCUUCGCCGACAUGCAGCAGCAU ------------------------(((......))).....((((.(((((........))))).))))(((.((((....)))).)))((((((..((......)))))))).. ( -29.00) >DroVir_CAF1 11435 115 + 1 UAAUCAUAUUUAAUCCGCAUCUGUAGCCAUUCGACUGCAUCGCCAGAAGGCGCCGGAUAGCCUGAAGGCGCUGCAGGAUCAUUUGGAGGGCUGCUUUGCGGACAUGCAGCAGCAC .............((((((...((((((.((((((((((.((((...((((........))))...)))).)))))......))))).))))))..))))))..(((....))). ( -47.30) >DroPse_CAF1 18548 91 + 1 ------------------------AGCCAUUCUGCUGCACCGCCAGAAGGCGCCCGAUAGCCUAAAGGCUAUGCAGGAGCACCUGGAGAGCUGCUUCUCGGACAUGCAGCAGCAC ------------------------.......((((((((.((((....)))).(((((((((....))))))..(((((((.((....)).))))))))))...))))))))... ( -39.30) >DroEre_CAF1 9267 91 + 1 ------------------------AGCUAUUCAGCUACAUCGCUUGCGGGCGCCAGACAGUCUGAAAGCUCUGCAGGAACACCUGGAACGCUGUUUCGCCGAAAUGCAGCAGCAU ------------------------.(((.(((((........(((((((((..(((.....)))...)).))))))).....)))))..(((((...........)))))))).. ( -28.12) >DroYak_CAF1 9372 91 + 1 ------------------------GGCCAUUCAGCUACAUCGCUUGCGGGCGCCAGACAGUCUGAAAGCUCUGCAGGAGCACCUGGAACGCUGUUUCGCCGACAUGCAGCAGCAU ------------------------(((.(..((((......((((.(((((........))))).))))....((((....))))....))))..).)))...((((....)))) ( -29.50) >DroPer_CAF1 18526 91 + 1 ------------------------AGCCAUUCUGCUGCACCGACAGAAGGCGCCCGAUAGCCUAAAGGCUAUGCAGGAGCACCUGGAGAGCUGCUUCUCGGACAUGCAGCAGCAC ------------------------.......((((((((((((....(((.((((.((((((....))))))...)).)).)))((((.....))))))))...))))))))... ( -37.00) >consensus ________________________AGCCAUUCAGCUGCAUCGCCAGAAGGCGCCAGAUAGCCUGAAAGCUCUGCAGGAGCACCUGGAGCGCUGCUUCGCCGACAUGCAGCAGCAC .........................((..(((.........(((...((((........))))...)))....((((....))))))).(((((...........))))).)).. (-22.26 = -20.43 + -1.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:43 2006