Locus 7387

Sequence ID 3R_DroMel_CAF1
Location 19,615,324 – 19,615,440
Length 116
Max. P 0.668995
window11942

overview

Window 2

Location 19,615,324 – 19,615,440
Length 116
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 84.36
Mean single sequence MFE -23.18
Consensus MFE -16.93
Energy contribution -17.79
Covariance contribution 0.86
Combinations/Pair 1.04
Mean z-score -1.75
Structure conservation index 0.73
SVM decision value 0.29
SVM RNA-class probability 0.668995
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19615324 116 - 27905053
GCACCCAAGCGGAUGGGAUAUUUGAUAAACCCUCGGACGCACCCCCGCCAUCCACCAACGUCGUCCCACCGGAAUCCCCUUCUUCUAAGC-GCUUGUGCAACCAAUCCAUUUCAUAC
((((..((((((.((((((....((.......))(((.((......))..))).........))))))))((.....))...........-)))))))).................. ( -25.40)
>DroSec_CAF1 21766 116 - 1
GCACCCAAGCGGAUGGGAUAUUUGAUAAACCCUCGGACGCACCCCCGCCAUCCACCAUCGUCGUCCCACCGGAAUCCCCUUCUUCUAAGC-GCUUGUGCAACCCAUCCAUUUCAUAC
((......))(((((((...(((((.......))))).((((...(((...............(((....)))...............))-)...))))..)))))))......... ( -27.21)
>DroSim_CAF1 22058 116 - 1
GCACCCAAGCGGAUGGGAUAUUUGAUAAACCCUCGGACGCACCCCCGCCAUCCACCAACGUCGUCCCACCGGAAUCCCCUUCUUCUAAGC-GCUUGUGCAACCCAUCCAUUUCAUAC
((......))(((((((...(((((.......))))).((((...(((...............(((....)))...............))-)...))))..)))))))......... ( -27.21)
>DroEre_CAF1 22447 109 - 1
GCACCCAAGCGGAUGGGAUAUUUGAUAAAACCCCCA----GCCCCCACCAUCUAUCAA---CGUUCCACCGGAAUCCCCUUCUUCUAAAC-GCUUGUGCAACCAAUCCAUUUCAUAC
((((..((((((.((((((..((((((.........----............))))))---.))))))))((.....))...........-)))))))).................. ( -21.20)
>DroYak_CAF1 22053 93 - 1
GCACCCAAGCGGAUGGGAUAUUUGAUAAACC---C------------------AGCAA---CGUUCCACCGGAAUCCCCUUUUUCUAACCCCCUUGUGCAACCAAUUCAUUUCAUAC
((((.....(((.((((((..(((.......---.------------------..)))---.)))))))))(((........)))..........)))).................. ( -14.90)
>consensus
GCACCCAAGCGGAUGGGAUAUUUGAUAAACCCUCGGACGCACCCCCGCCAUCCACCAACGUCGUCCCACCGGAAUCCCCUUCUUCUAAGC_GCUUGUGCAACCAAUCCAUUUCAUAC
((((..((((((.((((((..............(((........)))...............))))))))((((........)))).....)))))))).................. (-16.93 = -17.79 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:41 2006