Locus 7386

Sequence ID 3R_DroMel_CAF1
Location 19,612,874 – 19,612,986
Length 112
Max. P 0.743764
window11941

overview

Window 1

Location 19,612,874 – 19,612,986
Length 112
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 93.34
Mean single sequence MFE -25.68
Consensus MFE -23.26
Energy contribution -23.58
Covariance contribution 0.32
Combinations/Pair 1.04
Mean z-score -1.24
Structure conservation index 0.91
SVM decision value 0.46
SVM RNA-class probability 0.743764
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19612874 112 - 27905053
AAGCGAAUAUAUAAAAUAAACCGCAGUUAAGGCGCUUCGUCAUCAAUUGGUGUCGAAGUUGGCGUCGUGACUGGUGACUGGACAGCAUGGAAA--A--AAAAGAGAAAUAAUAAUA
....................((.((((((.(((((((((.((((....)))).)))....)))))).))))))(((.((....)))))))...--.--.................. ( -26.50)
>DroSec_CAF1 19329 110 - 1
ACGCGAAUAUAUAAAAUAAACCGCAGUUGAGGCGCUUCGUCAUCAAUUGGUGUCGAAGUUGGCGUCGUGACUGGUGACUGGACAGCAUGGAAA--AA-AAAAGAGAAACAA---UA
....................((.(((((..(((((((((.((((....)))).)))....))))))..)))))(((.((....)))))))...--..-.............---.. ( -25.30)
>DroSim_CAF1 19609 109 - 1
ACGCGAAUAUAUAAAAUAAACCGCAGUUGAGGCGCUUCGUCAUCAAUUGGUGUCGAAGUUGGCGUCGUGACUGGUGACUGGACAGCAUGGAAA--A--AAAAGAGAAACAA---UA
....................((.(((((..(((((((((.((((....)))).)))....))))))..)))))(((.((....)))))))...--.--.............---.. ( -25.30)
>DroEre_CAF1 19934 113 - 1
ACGUGAAUAUAUAAAAUAAGCCGCAGUUCAGGCGCUUCGUCAUCAAUUGGUGUCGAAGUUGGCGUCGUGACUGGUGACUGGACAGCAUGAAAACAAAAAGAAGAGAAAUAA---UA
.(((.(.............(((........)))((((((.((((....)))).))))))).)))(((((.(((.........)))))))).....................---.. ( -27.20)
>DroYak_CAF1 19530 111 - 1
ACGUGAAUAUAUAAAAUAAACCGCAGUUCAGGCGCUUCGUCAUCAAUUGGUGUCGAAGUUGGCGUCGUGACUGGUGACUGGACAGCAUGAAAA--AAUAAAAGAGAAAUAC---UA
......................((.((((((((((((((.((((....)))).)))....))))))......(....)))))).)).......--................---.. ( -24.10)
>consensus
ACGCGAAUAUAUAAAAUAAACCGCAGUUCAGGCGCUUCGUCAUCAAUUGGUGUCGAAGUUGGCGUCGUGACUGGUGACUGGACAGCAUGGAAA__AA_AAAAGAGAAAUAA___UA
.......................((((((.(((((((((.((((....)))).)))....)))))).))))))(((.((....)))))............................ (-23.26 = -23.58 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:40 2006