Locus 7385

Sequence ID 3R_DroMel_CAF1
Location 19,612,316 – 19,612,420
Length 104
Max. P 0.845711
window11940

overview

Window 0

Location 19,612,316 – 19,612,420
Length 104
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 78.15
Mean single sequence MFE -28.46
Consensus MFE -22.78
Energy contribution -23.54
Covariance contribution 0.76
Combinations/Pair 1.10
Mean z-score -1.53
Structure conservation index 0.80
SVM decision value 0.77
SVM RNA-class probability 0.845711
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19612316 104 - 27905053
AGGCUAUGGAAAAGUAAGCACUUGUGUAUUCAGCAGAUUGGGGGAGUGCACGAUGGGAGUUCUAUUGUUCACUUGGAAUUCAACCCAAUCCAGGACAGACACAU---------
..(((((......)).)))...(((((..((....(((((((.(((((.(((((((.....))))))).))))).(....)..)))))))...))...))))).--------- ( -29.00)
>DroSec_CAF1 18814 98 - 1
UGCUCA---------------GUGUGUGUUCAGCAGAUUGGGGGAGUGCACGAUGGGAGUUCUAUUGCUCACUUGGAAUACAUCCCAAUGCAGUACAGAUACAUAUAUAGAUA
......---------------((((.(((...(((..(((((((((((..((((((.....))))))..)))))(.....).)))))))))...))).))))........... ( -26.30)
>DroSim_CAF1 19087 98 - 1
UGUUCA---------------GUGUGUGUUCAGCAGAUUGGGGGAGUGCACGAUGGGAGUUCUAUUGUUCACUUGGAAUACAUCCCAAUGCAGGACAGAUACAUAUAUAGAUA
......---------------((((.(((((.(((..(((((((((((.(((((((.....))))))).)))))(.....).))))))))).))))).))))........... ( -32.10)
>DroEre_CAF1 19399 105 - 1
UGGAUAUGGAAAAUUCAGCAC-UGUGUGUUCAGCAGAUUGGGGGAGUGCACGAUGGGAGUUCUAUUGUUCACUUUGAAUACAUUCCAAUGCAGGACAGAUACAGAU-------
(((((.......)))))...(-(((((((((.(((..(((((((((((.(((((((.....))))))).)))))........))))))))).)))))..)))))..------- ( -27.70)
>DroYak_CAF1 18993 106 - 1
UGGAUAUGGAAAAUACAGCACUUGUGUGUUCAGCAGAUUGGGGGAGUGCACGAUGGGAGUUCUAUUGUUCACUUUGAAUAUCUCCCAAUGCAAAACAGAUACAAAU-------
((....(((((.((((((...)))))).))).(((..(((((((((((.(((((((.....))))))).)))........)))))))))))....))....))...------- ( -27.20)
>consensus
UGGAUAUGGAAAA___AGCACGUGUGUGUUCAGCAGAUUGGGGGAGUGCACGAUGGGAGUUCUAUUGUUCACUUGGAAUACAUCCCAAUGCAGGACAGAUACAUAU_______
......................(((.(((((.(((..(((((((((((.(((((((.....))))))).)))))........))))))))).))))).)))............ (-22.78 = -23.54 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:39 2006