Locus 7383

Sequence ID 3R_DroMel_CAF1
Location 19,609,550 – 19,609,644
Length 94
Max. P 0.984153
window11936 window11937

overview

Window 6

Location 19,609,550 – 19,609,644
Length 94
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 91.71
Mean single sequence MFE -32.38
Consensus MFE -27.20
Energy contribution -28.12
Covariance contribution 0.92
Combinations/Pair 1.09
Mean z-score -1.68
Structure conservation index 0.84
SVM decision value 1.08
SVM RNA-class probability 0.912653
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19609550 94 + 27905053
GCUGAAU-UGAAUUCCGUUGAAGUGCGAGUGAGUGAGCGAGUUAAAGUUAAGUCCUCGGCCUCCUGCAUAGCGGUAGU------------CACUCGCAUAUAAAAGA
.......-..............((((((((((.((((.((.(((....))).))))))..((.((((...)))).)))------------)))))))))........ ( -25.60)
>DroSec_CAF1 16053 105 + 1
GCUGAAU-UGAAUUCCGUUGAAGUGCGAGUGAGUGAGCGAGUUAAAGUUAAGUCCUCGGCCUCCUGCAUAGCGGUAGU-UGGAGCACACUCACACGCAUAUAAAAGA
.......-..............(((((.(((((((.((((.(((....))).)).....((..((((......)))).-.)).)).))))))).)))))........ ( -29.70)
>DroSim_CAF1 16380 105 + 1
GCUGAAU-UGAAUUCCGUUGAAGUGCGAGUGAGUGAGCGAGUUAAAGUUAAGUCCUCGGCCUCCUGCAUAGCGGUAGU-UGGAGCACACUCACUCGCAUAUAAAAGA
.......-..............(((((((((((((.((((.(((....))).)).....((..((((......)))).-.)).)).)))))))))))))........ ( -34.60)
>DroEre_CAF1 16579 106 + 1
GCUGAAU-UAAAUUCCGGUGAAGUGCGAGUGAGUGAGCGAGUUAAAGUUAAGUCCUCGGCCUCCUGCAUAGCGGUAGUUUGGAGCACACUCACUCGCACACAAAAGA
((((...-.......))))...(((((((((((((.((((.(((....))).))((..((..((.((...))))..))..)).)).)))))))))))))........ ( -37.00)
>DroYak_CAF1 16228 107 + 1
GCAGAAUGUGAAUUCCGUUGAAGUGCGAGUGAGUGAGCGAGUUAAAGUUAAGUCCUCGGCCUCCUGCAUAGCGGCAGUUUGGAGCACACUCACUCGUAUACAAAAGA
((.((((....)))).))....(((((((((((((.((((.(((....))).)).....((..((((......))))...)).)).)))))))))))))........ ( -35.00)
>consensus
GCUGAAU_UGAAUUCCGUUGAAGUGCGAGUGAGUGAGCGAGUUAAAGUUAAGUCCUCGGCCUCCUGCAUAGCGGUAGU_UGGAGCACACUCACUCGCAUAUAAAAGA
((.((((....)))).))....(((((((((((((((.((.(((....))).)))))..((..((((......))))...)).....))))))))))))........ (-27.20 = -28.12 +   0.92)

alignment

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secondary structure

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dotplot

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Window 7

Location 19,609,550 – 19,609,644
Length 94
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 91.71
Mean single sequence MFE -29.84
Consensus MFE -24.48
Energy contribution -26.08
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.82
SVM decision value 1.97
SVM RNA-class probability 0.984153
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19609550 94 - 27905053
UCUUUUAUAUGCGAGUG------------ACUACCGCUAUGCAGGAGGCCGAGGACUUAACUUUAACUCGCUCACUCACUCGCACUUCAACGGAAUUCA-AUUCAGC
.........((((((((------------(...((........)).(..((((.............))))..)..)))))))))...............-....... ( -21.32)
>DroSec_CAF1 16053 105 - 1
UCUUUUAUAUGCGUGUGAGUGUGCUCCA-ACUACCGCUAUGCAGGAGGCCGAGGACUUAACUUUAACUCGCUCACUCACUCGCACUUCAACGGAAUUCA-AUUCAGC
.........((((.(((((((.((....-.((.((........))))...(((.............))))).))))))).))))...............-....... ( -26.72)
>DroSim_CAF1 16380 105 - 1
UCUUUUAUAUGCGAGUGAGUGUGCUCCA-ACUACCGCUAUGCAGGAGGCCGAGGACUUAACUUUAACUCGCUCACUCACUCGCACUUCAACGGAAUUCA-AUUCAGC
.........((((((((((((.((....-.((.((........))))...(((.............))))).))))))))))))...............-....... ( -30.92)
>DroEre_CAF1 16579 106 - 1
UCUUUUGUGUGCGAGUGAGUGUGCUCCAAACUACCGCUAUGCAGGAGGCCGAGGACUUAACUUUAACUCGCUCACUCACUCGCACUUCACCGGAAUUUA-AUUCAGC
(((..((.(((((((((((((.((......((.((........))))...(((.............))))).)))))))))))))..))..))).....-....... ( -36.02)
>DroYak_CAF1 16228 107 - 1
UCUUUUGUAUACGAGUGAGUGUGCUCCAAACUGCCGCUAUGCAGGAGGCCGAGGACUUAACUUUAACUCGCUCACUCACUCGCACUUCAACGGAAUUCACAUUCUGC
....(((....((((((((((.((......((((......))))(((...(((.......)))...))))).)))))))))).....)))((((((....)))))). ( -34.20)
>consensus
UCUUUUAUAUGCGAGUGAGUGUGCUCCA_ACUACCGCUAUGCAGGAGGCCGAGGACUUAACUUUAACUCGCUCACUCACUCGCACUUCAACGGAAUUCA_AUUCAGC
.........((((((((((((.((......((.((........))))...(((.............))))).))))))))))))........((((....))))... (-24.48 = -26.08 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:36 2006