Locus 7382

Sequence ID 3R_DroMel_CAF1
Location 19,581,652 – 19,581,771
Length 119
Max. P 0.542778
window11935

overview

Window 5

Location 19,581,652 – 19,581,771
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.17
Mean single sequence MFE -37.85
Consensus MFE -25.92
Energy contribution -26.52
Covariance contribution 0.59
Combinations/Pair 1.41
Mean z-score -1.33
Structure conservation index 0.68
SVM decision value 0.02
SVM RNA-class probability 0.542778
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19581652 119 - 27905053
AAGUACUUCAACCUGGCCACCCAAUCAGGCCAUGUUUUAGCCUAUUAUAAUCUGGGAGUGAUGAAUGCCUACGGUAUGGGAAUGCUGCGUUCAUGUCCAGCAGCAGUAGAAGUAAGUU-U
...(((((((((.(((((.........))))).)))...............(((((....((((((((....(((((....))))))))))))).)))))........))))))....-. ( -32.80)
>DroVir_CAF1 2869 119 - 1
AAGUAUUUCAACUUGGCCACACAGUCGGGCCAUGUUUUGGCAUACUACAAUUUGGGCAUUAUGCAUGCAUACGGAAUGGGCAUGCUGCGUUCCUGCCCAGCUGCCGUUGAGGUAGGUU-C
.(((((.(((((.(((((.(......)))))).))..))).))))).....(((((((..(((((.((((.(......)..)))))))))...)))))))(((((.....)))))...-. ( -41.10)
>DroGri_CAF1 2953 119 - 1
AAAUAUUUUAACUUGGCCACACAGUCAGGCCAUGUCUUGGCCUACUACAAUCUGGGCGUUAUGCAUGCCUACGGCAUGGGCAUGCUGCGAUCCUGUCCUGCAGCUGUUGAGGUAGCUU-U
...(((((((((...((...(((((.((((((.....))))))))).......((((((...(((((((((.....))))))))).))).))).))...))....)))))))))....-. ( -41.50)
>DroWil_CAF1 8812 119 - 1
AAAUACUUUAAUUUGGCCACUCAAUCCGGUCAUGUGUUGGCCUAUUAUAAUCUGGGUGUAAUGCAUGCCUACGGCAUGGGCAUGUUGCGCUCCUGUCCAGCAGCUGUCGAGGUGAGUU-G
..................(((((..((((.((((((((((((((........))))).)))))))))))..(((((...((.(((((.((....)).)))))))))))).))))))).-. ( -34.70)
>DroMoj_CAF1 2824 119 - 1
AAGUAUUUCAAUUUGGCCACACAGUCCGGCCAUGUUUUGGCGUACUAUAAUUUGGGAAUUAUGCAUGCCUACGGUAUGGGCAUGCUGCGAUCUUGCCCAGCUGCUGUUGAGGUACGUU-U
..((((((((((..(((.....(((.((.(((.....))))).)))......((((.(((..(((((((((.....)))))))))...)))....)))))))...))))))))))...-. ( -39.60)
>DroAna_CAF1 2834 120 - 1
AAGUACUUUAACCUGGCUACUCAUUCGGGGCAUGUUCUUGCCUACUACAAUCUCGGUGUGAUGCAUGCUUACGGCUUGGGAAUGUUGCGCUCCUGUCCAGCAGCGGUUGAGGUAACUUCC
(((((((((((((..(((.((((.(((((((((((((.((((............)))).)).)))))))).)))..))))...((((.((....)).)))))))))))))))).)))).. ( -37.40)
>consensus
AAGUACUUCAACUUGGCCACACAGUCAGGCCAUGUUUUGGCCUACUACAAUCUGGGAGUUAUGCAUGCCUACGGCAUGGGCAUGCUGCGAUCCUGUCCAGCAGCUGUUGAGGUAAGUU_U
...(((((((((..(((.....(((.((((((.....))))))))).....(((((((....(((((((((.....)))))))))........)))))))..))))))))))))...... (-25.92 = -26.52 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:34 2006