Locus 7381

Sequence ID 3R_DroMel_CAF1
Location 19,577,637 – 19,577,757
Length 120
Max. P 0.708047
window11934

overview

Window 4

Location 19,577,637 – 19,577,757
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.22
Mean single sequence MFE -50.77
Consensus MFE -29.82
Energy contribution -30.85
Covariance contribution 1.03
Combinations/Pair 1.30
Mean z-score -2.15
Structure conservation index 0.59
SVM decision value 0.37
SVM RNA-class probability 0.708047
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19577637 120 + 27905053
ACUCCCGGGCCACAUCCGUCAGGCUCUUGGCCUCGGCGGACUCCUUGUUGUUGCUGCUGCUGCUGCAAAUGGAUGAGGAGGCAGCGGCCUCGCUGGUCUCUGUGGUCUGGGCAGCGUUCU
.(((((((((((((((((((((((.....)))).))))))(((((..((.((((.((....)).))))...))..))))).(((((....))))).....))))))))))).))...... ( -61.70)
>DroPse_CAF1 23078 114 + 1
ACUCGCGCGCCACGUCUGUCAGACUCUUGGCCUCUGAUGCCUCAGAUUUGUUGUUGUUGCUGCUGGAGCUGGA---GGAGGCA---GCCUCGCUGCUGUCUGUGGAUUGGGCAGCCUUCU
....((..(((..(((((.(((((......(((((...((..(((....((.......))..)))..)).)))---)).((((---((...))))))))))))))))..))).))..... ( -40.00)
>DroEre_CAF1 4828 120 + 1
ACUCCCGGGCAACGUCUGUCAGGCUCUUGGCCUCGGCGGACUCCUUGUUGUUGUUGCUGCUGCUGCAAAUUGAUGAGGAGGCAGCGGCCUCGCUGGUCUCUGUGGUCUGGGCAGCGUUCU
.(((((((((....((((((((((.....)))).))))))(((((..((.((((.((....)).))))...))..)))))((((.((((.....)))).)))).))))))).))...... ( -53.50)
>DroYak_CAF1 4847 120 + 1
ACUCCCGGGCCACAUCCGUCAGGCUUUUGGCCUCGGCGGACUCCUUGUUGUUAUUGCUGCUGCUGCAAAUCGAUGACGAGGCAGCGGCCUCGCUGGUCUCUGUGGUCUGGGCAGCGUUUU
.(((((((((((((((((((((((.....)))).)))))).........(((((((.(((....)))...)))))))(((((((((....)))).)))))))))))))))).))...... ( -56.60)
>DroAna_CAF1 5291 120 + 1
AUUCGCGGGCCACAUCGUUCAGGCUCUUGGCCUCAGCAGACUCUUUAUUAUUGUUGCUGCUGUUGCAGCUGGAGGAUGAGGCAGCGGCCUCGCUGGAAUCUGUGGUCUGUGCGGCGUUCU
...(((((((((((..((((((((.....))))((((...((((...........(((((....))))).))))...(((((....))))))))))))).)))))))))))......... ( -50.80)
>DroPer_CAF1 26673 114 + 1
ACUCGCGCGCCACGUCUGUCAGACUCUUGGCUUCUGAUGCCUCAGAUUUGUUGUUGUUGCUGCUGGAGCUGCA---GGAGGCA---GCCUCGCUGCUGUCUGUGGAUUGGGCAGCCUUCU
........((((.(((.....)))...)))).(((((....)))))............((((((.((.(..((---(..((((---((...))))))..)))..).)).))))))..... ( -42.00)
>consensus
ACUCCCGGGCCACAUCUGUCAGGCUCUUGGCCUCGGCGGACUCCUUGUUGUUGUUGCUGCUGCUGCAAAUGGAUGAGGAGGCAGCGGCCUCGCUGGUCUCUGUGGUCUGGGCAGCGUUCU
.(((((((((((((...(((((......(((..((((((...(......)...))))))..))).............(((((....))))).)))))...))))))))))).))...... (-29.82 = -30.85 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:33 2006