Locus 7378

Sequence ID 3R_DroMel_CAF1
Location 19,570,688 – 19,570,783
Length 95
Max. P 0.807621
window11929

overview

Window 9

Location 19,570,688 – 19,570,783
Length 95
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 78.94
Mean single sequence MFE -23.96
Consensus MFE -7.82
Energy contribution -7.98
Covariance contribution 0.16
Combinations/Pair 1.27
Mean z-score -2.20
Structure conservation index 0.33
SVM decision value 0.64
SVM RNA-class probability 0.807621
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19570688 95 - 27905053
ACUAGA-ACAAAGUCACU--CAA---AAGAUGUUGACUAUUUGCCAUCAAAGUUCCAUCAAAUGGGUGUGAAUAACAAGACAGGAA-CCGAAUGGAGUG-GCA
......-.....((((((--(..---..((((..((....))..))))...(((((......((..(((.....)))...))))))-)......)))))-)). ( -21.10)
>DroSec_CAF1 13377 96 - 1
AACAGAAACAAAGUCACU--CAA---AAGAUGUUGACUAUUCGCCAUCAAAGGUCCAUCAAAUGGGUGUGAAAAACACGACAGGAA-CCGAAUGGAGUG-GCA
............((((((--(..---..((((.(((....))).))))...(((((.((....))((((.....))))....)).)-)).....)))))-)). ( -25.50)
>DroSim_CAF1 14673 96 - 1
ACCAGAAACAAAGUCACU--CCA---AAGAUGUUGACUAUUCGCCAUCAAAGGUCCAUCAAAUGUGUGUGAAAAACACGACAGGAA-CCGAAUGGAGUG-GCA
............((((((--(((---..((((.(((....))).))))...(((((......(((((((.....)))).))))).)-))...)))))))-)). ( -30.20)
>DroEre_CAF1 13401 90 - 1
ACUAGA-ACAAAGUACUAGUCAGUCGCUGAUGUUGAUUAUUUG-----------CCAUCAAAUGGGUGUGAAGAACACGAAAGGAAUCCAUAUGGAGUG-GUA
.....(-(((.((((((....))).)))..)))).......((-----------((((((.((((((((.....)).(....)..)))))).))..)))-))) ( -17.60)
>DroYak_CAF1 13756 100 - 1
ACUAGA-ACAAAGCUCCA--CAGUGCCUGAUGUUGAUUAUUUGGCAUCAAAGGUCCAUCAAAUGGGUGUGAAAAACAUGACAGGAAAACCAAUGGAGUGCGGA
......-.(...((((((--..(..((((((((..(....)..)))))..)))..).((...((.((((.....))))..)).)).......))))))...). ( -25.40)
>consensus
ACUAGA_ACAAAGUCACU__CAA___AAGAUGUUGACUAUUUGCCAUCAAAGGUCCAUCAAAUGGGUGUGAAAAACACGACAGGAA_CCGAAUGGAGUG_GCA
....................................(((((((...........((((...))))((((.....))))..........)))))))........ ( -7.82 =  -7.98 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:28 2006