| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,569,227 – 19,569,320 |
| Length | 93 |
| Max. P | 0.908286 |
| Location | 19,569,227 – 19,569,320 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 73.46 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -8.80 |
| Energy contribution | -9.08 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19569227 93 + 27905053 CUUUUAAUAC---UUUCUUCCGAACAUUUAG-GUAUUUUUACUACUUAAGGGGCAAGUCUUGAUCAUUUGAUAGAAUUAAGUCAUUCAGGGCUUU-AA ..........---........(..(.(((((-(((.......)))))))))..)(((((((((..(((((((...)))))))...))))))))).-.. ( -16.80) >DroSec_CAF1 11915 92 + 1 CUUUUAAUAC---UUUCUUCUUAAUUUUUAA-GUUCUUUGACUACUUAAGGGGA-AGUCUUGAUCUUUUGAUAGAAUUAAGUGAGUCAGGGCUUU-UA ..........---.((((((((((......(-(((....))))..)))))))))-)(((((((((.((((((...)))))).)).)))))))...-.. ( -17.30) >DroSim_CAF1 12884 93 + 1 CUUUUAAUAU---UUUCUUCUUAAUUUUUAA-GUAUUUUGACUGCUUAAGGGGAAAGUCUUGAUCAUUUGAUAGAAUUAAGUGAGUCAGGGCUUU-UA ..........---...........(((((((-(((.......))))))))))((((((((((((((((((((...))))))))).))))))))))-). ( -24.20) >DroEre_CAF1 11880 89 + 1 UUUACAAUACCACCUUCUUCG--------AA-GUAUUUCAGCUACUUGAAAGGAACAUCCUGAUCACUUGAUUGAAUGAAGUCAGUCAGGUCUUCAUU ............((((..((.--------((-(((.......))))))))))).......(((..((((((((((......))))))))))..))).. ( -19.50) >DroYak_CAF1 12198 86 + 1 CUUUUAACAC---UUUCUUCC--------UUUUUUUUUAAACUACUUAAGGGGAAAGUCCUAAACACUUGAUUACAUUAAGUCAGUCAGGGCUUU-UA ..((((..((---(((((.((--------((................)))))))))))..))))..(((((((((.....)).))))))).....-.. ( -15.69) >consensus CUUUUAAUAC___UUUCUUCC_AA__UUUAA_GUAUUUUAACUACUUAAGGGGAAAGUCUUGAUCAUUUGAUAGAAUUAAGUCAGUCAGGGCUUU_UA ...................................((((((....))))))...(((((((((..(((((((...)))))))...))))))))).... ( -8.80 = -9.08 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:27 2006