Locus 7376

Sequence ID 3R_DroMel_CAF1
Location 19,566,248 – 19,566,355
Length 107
Max. P 0.710550
window11927

overview

Window 7

Location 19,566,248 – 19,566,355
Length 107
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 82.07
Mean single sequence MFE -23.16
Consensus MFE -17.41
Energy contribution -17.73
Covariance contribution 0.32
Combinations/Pair 1.16
Mean z-score -1.70
Structure conservation index 0.75
SVM decision value 0.37
SVM RNA-class probability 0.710550
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19566248 107 - 27905053
CUAUUAAUACUAUUAACUUCCCAGCCCUGAAUACGAAUA------UUAUUUCCUGGGAAUAC--GUUGAUGUUGUCAGGGAUUAAAUGGGAAUUCAUUUCGUAUUCAUUUUAUGC
...........................((((((((((..------..((((((....(((.(--.(((((...))))).))))....))))))....))))))))))........ ( -22.40)
>DroSec_CAF1 8924 109 - 1
CUAUUAAUACUAUUAACUUCCCAGCCCUGAAUACGAAUA------UUUUUUCCUGGGAAUACACUUUGAUGUUGUCAGGGAUUGAAUGGGAACUCAUUUCGUAUUCAUUUAAUGC
...........................((((((((((..------((..(((((((.(((((.....).)))).)))))))..))((((....))))))))))))))........ ( -22.90)
>DroSim_CAF1 9909 107 - 1
CUAUUAAUACUAUUAACUUCCCAGCCCUGAAUACGAAUA------UUAUUUCCUGGGAAUAC--GUUCAUGUUGUCAGGGAUUAAAUGGAAACUCAUUUCGUAUUCAUUUUAUGC
...........................((((((((((..------(((.(((((((.((((.--.....)))).))))))).)))..(....)....))))))))))........ ( -24.40)
>DroEre_CAF1 8914 96 - 1
CUAUUAA----------UUCCCAGCCCUGAAUACGAAUA------GUAUUUCCUGGGAACG---GGUGAUGUUGUCAGCGAUUGAAUGAGAAUUAAUUUCAUAUUCACUUAAUGU
.......----------(((((((....((((((.....------)))))).))))))).(---(((((.((((....))))...((((((.....))))))..))))))..... ( -22.50)
>DroYak_CAF1 9066 104 - 1
CUAUUAA---------CUUCCCAGCCCUGAAUACGAAUAUUACGAGUAUUUCCUGGGAACAU--GGUGAUGUUCUCAGGUAUUGAACGCGAAUUAAUUUCAUAUUCAUUUAAUGC
.......---------...........((((((.(((.(((.((.((....(((((((((((--....)))))))))))......)).)))))....))).))))))........ ( -23.60)
>consensus
CUAUUAAUACUAUUAACUUCCCAGCCCUGAAUACGAAUA______UUAUUUCCUGGGAAUAC__GUUGAUGUUGUCAGGGAUUGAAUGGGAAUUCAUUUCGUAUUCAUUUAAUGC
...........................((((((((((........(((((((((((.((((........)))).)))))....))))))........))))))))))........ (-17.41 = -17.73 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:26 2006