Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,560,579 – 19,560,671 |
Length | 92 |
Max. P | 0.999278 |
Location | 19,560,579 – 19,560,671 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 90.53 |
Mean single sequence MFE | -23.37 |
Consensus MFE | -19.50 |
Energy contribution | -19.34 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.63 |
Structure conservation index | 0.83 |
SVM decision value | 2.86 |
SVM RNA-class probability | 0.997447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19560579 92 + 27905053 GAUGUAGAAAAAACAUAAACCAUAAAACUGCUGCAACAAGUGAAGCAGCUUUGUCAAGUGCAUUGCCGCUUCCUUGUUUU-UUU---UUUU-UU-----UU--U ..(((((.......................)))))(((((.(((((.((..(((.....)))..)).))))))))))...-...---....-..-----..--. ( -19.60) >DroSec_CAF1 3321 94 + 1 GAUGUAGAA-AAACAUAAACCAUAAAACUGCUGCAACAAGUGAAGCAGCUUUGUCAAGUGCAUUGCCGCUUCCUUGUUUU-UUUACAUUUU-UU-----UU--U (((((((((-(((((..............(((......)))(((((.((..(((.....)))..)).)))))..))))))-))))))))..-..-----..--. ( -25.60) >DroSim_CAF1 3336 96 + 1 GAUGUAGAA-AAACAUAAACCAUAAAACUGCUGCAACAAGUGAAGCAGCUUUGUCAAGUGCAUUGCCGCUUCCUUGUUUUUUUUACAUUUUUUU-----UU--U (((((((((-((........((......))....((((((.(((((.((..(((.....)))..)).)))))))))))))))))))))).....-----..--. ( -24.10) >DroEre_CAF1 3443 86 + 1 GAUGUGGAA-AAACAUAAACCAUAAAACUGCUGCAACAAGUGAAGCAGCUUUGUCAAGUGCAUUGCCGCUUCCUUGUUUU-UUU---GUU-------------A ..(((((..-.........))))).(((......((((((.(((((.((..(((.....)))..)).)))))))))))..-...---)))-------------. ( -21.80) >DroYak_CAF1 3321 98 + 1 GAUGUAGAA-AAACAUAAACCAUAAAACUGCUGCAACAAGUGAAGCAGCUUUGUCAAGUGCAUUGCCGCUUCCUUGUUUU-UUU---UUUU-UUGUUGGUUUCA .((((....-..))))(((((((((((.......((((((.(((((.((..(((.....)))..)).)))))))))))..-...---..))-))).)))))).. ( -25.74) >consensus GAUGUAGAA_AAACAUAAACCAUAAAACUGCUGCAACAAGUGAAGCAGCUUUGUCAAGUGCAUUGCCGCUUCCUUGUUUU_UUU___UUUU_UU_____UU__U ..(((((.......................)))))(((((.(((((.((..(((.....)))..)).))))))))))........................... (-19.50 = -19.34 + -0.16)
Location | 19,560,579 – 19,560,671 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 90.53 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -19.80 |
Energy contribution | -19.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.83 |
Structure conservation index | 0.85 |
SVM decision value | 3.48 |
SVM RNA-class probability | 0.999278 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19560579 92 - 27905053 A--AA-----AA-AAAA---AAA-AAAACAAGGAAGCGGCAAUGCACUUGACAAAGCUGCUUCACUUGUUGCAGCAGUUUUAUGGUUUAUGUUUUUUCUACAUC .--..-----((-((..---...-..((((((((((((((..(((....).))..)))))))).)))))).......)))).......((((.......)))). ( -20.54) >DroSec_CAF1 3321 94 - 1 A--AA-----AA-AAAAUGUAAA-AAAACAAGGAAGCGGCAAUGCACUUGACAAAGCUGCUUCACUUGUUGCAGCAGUUUUAUGGUUUAUGUUU-UUCUACAUC .--..-----.(-((((((((((-..((((((((((((((..(((....).))..)))))))).))))))....((......)).)))))))))-))....... ( -24.10) >DroSim_CAF1 3336 96 - 1 A--AA-----AAAAAAAUGUAAAAAAAACAAGGAAGCGGCAAUGCACUUGACAAAGCUGCUUCACUUGUUGCAGCAGUUUUAUGGUUUAUGUUU-UUCUACAUC .--..-----..(((((((((((...((((((((((((((..(((....).))..)))))))).))))))....((......)).)))))))))-))....... ( -24.10) >DroEre_CAF1 3443 86 - 1 U-------------AAC---AAA-AAAACAAGGAAGCGGCAAUGCACUUGACAAAGCUGCUUCACUUGUUGCAGCAGUUUUAUGGUUUAUGUUU-UUCCACAUC .-------------...---...-..((((((((((((((..(((....).))..)))))))).))))))............(((.........-..))).... ( -20.40) >DroYak_CAF1 3321 98 - 1 UGAAACCAACAA-AAAA---AAA-AAAACAAGGAAGCGGCAAUGCACUUGACAAAGCUGCUUCACUUGUUGCAGCAGUUUUAUGGUUUAUGUUU-UUCUACAUC ..((((((..((-((..---...-..((((((((((((((..(((....).))..)))))))).)))))).......)))).))))))((((..-....)))). ( -26.84) >consensus A__AA_____AA_AAAA___AAA_AAAACAAGGAAGCGGCAAUGCACUUGACAAAGCUGCUUCACUUGUUGCAGCAGUUUUAUGGUUUAUGUUU_UUCUACAUC ..........................((((((((((((((..(((....).))..)))))))).)))))).................................. (-19.80 = -19.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:17 2006