Locus 7372

Sequence ID 3R_DroMel_CAF1
Location 19,556,023 – 19,556,129
Length 106
Max. P 0.685753
window11915

overview

Window 5

Location 19,556,023 – 19,556,129
Length 106
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.99
Mean single sequence MFE -29.73
Consensus MFE -22.48
Energy contribution -22.03
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -1.27
Structure conservation index 0.76
SVM decision value 0.32
SVM RNA-class probability 0.685753
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19556023 106 + 27905053
UGCACACUU----UUUACACCUUGAUACUUUCUAUCCUAGGCCCGGGGACUUUCGCCCAGGGCAUU-----AUCA-----GUUGAGUUACCAGGAACUCGUUUUGUGGCCCCGAGAGACA
.((.(((..----...((...((((((....(((...)))((((.(((.......))).))))..)-----))))-----)..(((((......)))))))...)))))........... ( -24.70)
>DroVir_CAF1 22442 99 + 1
----GUUUU----UUUACGCCUUGAUACUUUCUAUCCUUGGCCCGGGGACUUU-ACCCAGGGUGAU-----AAA------UGAGAGCUACUAGGAGCUCGUU-UGUGACCCCGAGAGACA
----(((((----((...(((..((((.....))))...)))..(((......-.))).((((.((-----(((------((((..((....))..))))))-))).)))).))))))). ( -34.60)
>DroGri_CAF1 23355 109 + 1
----CUUUUCUCGUUUACGCCUUGAUACUUUCUAUCCUAGGCCCGGGGACUUU-ACCCAGGGUGUGAUCAUAUUA-----UGAGAGCUACCAGGAGCUCGUU-UGUGACCCCGAGAGACA
----..((((((......((((.((((.....))))..))))..((((...((-(((....).))))(((((..(-----((((..((....))..))))).-))))))))))))))).. ( -34.20)
>DroWil_CAF1 32811 106 + 1
----CACUU----UUUACGCCUUGAUACUUUCUAUCAUAGGCCCGGGGACUUU-ACCCAGGGUGUA-----AAUAUUUAUAAAGAGUUACCAGGAACUCGUCGUGUUACCCCGAGAGACA
----..(((----(....(((((((((.....))))).)))).(((((..(((-(((....).)))-----))..........(((((......))))).........)))))))))... ( -27.20)
>DroMoj_CAF1 25772 97 + 1
----GU-------UUUACGCCUUGAUACUUUCUAUCCUAGGCCCGGGGACUUU-ACCCAGGGUGGC-----AAUU-----UAAGAGCUACCAGGAGCUCGUU-UGUGACCCCGAGAGACA
----((-------(((.(((((.((((.....))))..))))..(((......-.))).((((.((-----((..-----...(((((......)))))..)-))).)))).).))))). ( -33.60)
>DroAna_CAF1 24212 100 + 1
----CACAU----UUUACACCUUGAUACUUUCUAUCCUAGACCCGGGGACUUU-ACCCAGGGCACG-----AUGC-----AUAGAGUUACCAGGAACUCGUU-UGUAGCCCCGAGAGACA
----.....----..............(((((............(((......-.))).((((...-----.(((-----(..(((((......)))))...-)))))))).)))))... ( -24.10)
>consensus
____CACUU____UUUACGCCUUGAUACUUUCUAUCCUAGGCCCGGGGACUUU_ACCCAGGGUGUG_____AAUA_____UAAGAGCUACCAGGAACUCGUU_UGUGACCCCGAGAGACA
...........................(((((........(((((((........))).))))....................(((((......))))).............)))))... (-22.48 = -22.03 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:15 2006