Locus 7371

Sequence ID 3R_DroMel_CAF1
Location 19,555,819 – 19,555,911
Length 92
Max. P 0.821976
window11914

overview

Window 4

Location 19,555,819 – 19,555,911
Length 92
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 81.56
Mean single sequence MFE -34.63
Consensus MFE -21.99
Energy contribution -22.62
Covariance contribution 0.63
Combinations/Pair 1.19
Mean z-score -2.38
Structure conservation index 0.63
SVM decision value 0.68
SVM RNA-class probability 0.821976
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19555819 92 - 27905053
UGCGGAAAUCUGCCAGAGUA----AUCUUAGAUAUGGACGAGUUGGUAGG-ACUCGGCGGG-UGGUGUUCACACACUUU-CUCGUCUGAGA--AACCGCCU
.((((...((((((((....----.(((.......)))....))))))))-.(((((((((-.(((((....)))))..-)))).))))).--..)))).. ( -33.10)
>DroPse_CAF1 25132 85 - 1
UGCGGAAAUCUGCCAGAGUUUCUCACCUAAGAUAUGGACGAGUUGGUUGGCAUUCACCAUG-C---GUCU--ACGC----------UGGGGUUUGUCGCCU
.(((((((((((((((.....(((.((........))..)))....))))))....(((.(-(---(...--.)))----------)))))))).)))).. ( -26.40)
>DroSec_CAF1 24425 93 - 1
UGCGGAAAUCUGCCAGAGUA---AAUCUUAGAUAUGGACGAGUUGGUAGG-ACUCGCCGGGUUGGUGUUC-CACACUUU-CUCGGCUGAGA--AACCGCCU
.((((...((((((((....---..(((.......)))....))))))))-.(((((((((..((((...-..))))..-)))))).))).--..)))).. ( -36.00)
>DroSim_CAF1 23914 94 - 1
UGCGGAAAUCUGCCAGAGUA---AAUCUUAGAUAUGGACGAGUUGGUAGG-ACUCGCCGGGUUGGUGUUCCCACACCCU-CUCGGCUGAGA--AACCGCCU
.((((...((((((((....---..(((.......)))....))))))))-.(((((((((..(((((....)))))..-)))))).))).--..)))).. ( -37.70)
>DroEre_CAF1 24273 89 - 1
UGCGGAAAUCUGCCAGAGUA-----UCUUAGAUAUGGACGAGUUGGUAGG-ACUCGCCGGG-CGGAGUUC--ACGCUCU-CUCGGCUGAGA--AACCGCCU
.((((...((((((((..(.-----(((.......))).)..))))))))-.(((((((((-.(((((..--..)))))-)))))).))).--..)))).. ( -36.70)
>DroYak_CAF1 32679 90 - 1
UGCGGAAAUCUGCCAGAGUA-----UCUUAGAUAUGGACGAGUUGGUAGG-ACUCGCCGGG-CGGAGUUC--ACGCUCUUCUCGGCCGAGA--AACCGCCU
.((((...((((((((..(.-----(((.......))).)..))))))))-.(((((((((-.(((((..--..))))).))))).)))).--..)))).. ( -37.90)
>consensus
UGCGGAAAUCUGCCAGAGUA____AUCUUAGAUAUGGACGAGUUGGUAGG_ACUCGCCGGG_CGGUGUUC__ACACUCU_CUCGGCUGAGA__AACCGCCU
.((((....(((((((.((..................))...)))))))...(((((((((..((.((....)).))...)))))).))).....)))).. (-21.99 = -22.62 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:14 2006