Locus 7370

Sequence ID 3R_DroMel_CAF1
Location 19,549,978 – 19,550,084
Length 106
Max. P 0.807050
window11913

overview

Window 3

Location 19,549,978 – 19,550,084
Length 106
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 77.02
Mean single sequence MFE -19.05
Consensus MFE -1.92
Energy contribution -2.08
Covariance contribution 0.16
Combinations/Pair 1.38
Mean z-score -1.75
Structure conservation index 0.10
SVM decision value 0.64
SVM RNA-class probability 0.807050
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19549978 106 + 27905053
CUCAGUAUUUGGCACGUACCUUGAACACCCGAAAUUCGAUGAAUAUU-UCGAAUUUCGGGUGUUUAGAUUGCAUUAUUCAUUCCGAAAUUAUUUAACUUUAAUAGCA
...........((..(((..(((((((((((((((((((........-)))))))))))))))))))..)))....(((.....))).................)). ( -33.60)
>DroSec_CAF1 18221 97 + 1
CUCAGUAUUUGGUACGUGCCUUGUACACCGGAAAUUUGA--AAUAUU-UUC-------CAUAUUUAGAUUGCAAUAUUCAUUCUGAAAUUAUUUAACUUUAAUAGCA
....((((..(((....)))..))))...(((((.....--.....)-)))-------)...((((((.((.......)).)))))).................... ( -15.10)
>DroSim_CAF1 18035 97 + 1
CUCAGUAUUUGGCACGUGCC-UGUACACCCGAAAUUUGA--AAUAUUUUUC-------CAUAUUUAGAUUGCAUUAUUCAUUCCGAAAUUAUUUAACUUGAAUAGCA
....((((..(((....)))-.))))......(((((((--(.(((.....-------.)))))))))))((..((((((..................)))))))). ( -13.27)
>DroEre_CAF1 18503 97 + 1
CUCAAUUUCUGGCACGUGCCUUUGGCACCCGCAAUUCAA--AAUAUUCUUC-------CAUAUUUAGAUUGCAUUAUUCAAUCCGGAAUUGUUUAAAUUUUC-CGCC
..(((((.((((...(((((...)))))..((((((..(--(((((.....-------.)))))).))))))..........)))))))))...........-.... ( -20.60)
>DroYak_CAF1 26762 97 + 1
CUCAUUUUGUGGCACGUUCCUUUGGCACCCGCAGUUCGA--AAAAUGUUUC-------CAUAUUUAGAUGACAUUAUUCAAUACCGCAUUAUUUAAAUUUUA-CGCC
.......(((((............((....)).....((--(.((((((((-------........)).)))))).)))....)))))..............-.... ( -12.70)
>consensus
CUCAGUAUUUGGCACGUGCCUUGGACACCCGAAAUUCGA__AAUAUU_UUC_______CAUAUUUAGAUUGCAUUAUUCAUUCCGAAAUUAUUUAACUUUAAUAGCA
.......(((((...(((.....)))..))))).......................................................................... ( -1.92 =  -2.08 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:13 2006