Locus 7369

Sequence ID 3R_DroMel_CAF1
Location 19,542,043 – 19,542,141
Length 98
Max. P 0.547683
window11912

overview

Window 2

Location 19,542,043 – 19,542,141
Length 98
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 81.51
Mean single sequence MFE -28.65
Consensus MFE -18.61
Energy contribution -18.58
Covariance contribution -0.03
Combinations/Pair 1.15
Mean z-score -1.53
Structure conservation index 0.65
SVM decision value 0.03
SVM RNA-class probability 0.547683
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19542043 98 - 27905053
GAUGGCGACAACCUGGCGCCCAGUUUGAGCGGCAAAAGCUGCCAGUCCGAUUAUCUGGUAAGUUUUGUCCACUAACCGCCAAUUAAUAUUAAGCCCAC-----------
..(((((.(((.((((...)))).)))((.(((((((..((((((.........))))))..))))).)).))...))))).................----------- ( -28.90)
>DroVir_CAF1 10391 99 - 1
GAUGGCGACAAUCUGGCGCCCAGUUUAAGCGGCAAGAGCUGCCAGUCCGAUUAUCUGGUAAGUUUU---UGCUGAACGCCAAUUAAUAUUAAAGGCAAUGGC-------
..(((((.....((((...))))......((((((((((((((((.........))))).))))))---)))))..))))).....................------- ( -31.90)
>DroGri_CAF1 11497 90 - 1
GAUGGCGACAAUCUGGCGCCCAGUUUGAGCGGCAAGAGUUGUCAGUCUGAUUAUCUGGUAAGUUUU-GUUGCUGAACGCCAAUUAAUAAUA------------------
..(((((.(((.((((...)))).)))((((((((((.((..(((.........)))..)).))))-))))))...)))))..........------------------ ( -32.40)
>DroMoj_CAF1 12617 100 - 1
GACGGCGACAAUCUGGCGCCCAGUUUAAGCGGCAAGAGCUGCCAGUCCGAUUAUCUGGUAAGUUUU-G-CGCUGAACGCCAAUUAAUAUUAAAGGCAACGGC-------
...((((.(.....).))))..(((((.(((.(((((..((((((.........))))))..))))-)-))))))))(((.............)))......------- ( -29.52)
>DroAna_CAF1 10782 93 - 1
GACACCGACAACCUGGCGCCGAGUUUAAGCGGCAAAAGCUGCCAGUCCGAUUAUCUGGUAAGUUU--UUCACUGAACGCCAAUUAAUAUUUAG---AG-----------
.............((((((((........))))((((((((((((.........))))).)))))--))........))))............---..----------- ( -23.50)
>DroPer_CAF1 9630 107 - 1
GAUGGCGACAACCUGGCGCCGAGUCUAAGCGGCAAAAGCUGCCAGUCCGAUUAUCUGGUAAGUUUU-UUCACUGAACGCCAAUUAAUAUUAAGAGUAA-AGUAAAGGAG
..(((((..........((((........))))((((((((((((.........))))).))))))-)........))))).................-.......... ( -25.70)
>consensus
GAUGGCGACAACCUGGCGCCCAGUUUAAGCGGCAAAAGCUGCCAGUCCGAUUAUCUGGUAAGUUUU_UUCACUGAACGCCAAUUAAUAUUAAG_GCAA___________
...((((......((.(((.........))).))(((((((((((.........))))).))))))..........))))............................. (-18.61 = -18.58 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:12 2006