Locus 7368

Sequence ID 3R_DroMel_CAF1
Location 19,541,201 – 19,541,300
Length 99
Max. P 0.989643
window11911

overview

Window 1

Location 19,541,201 – 19,541,300
Length 99
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 80.42
Mean single sequence MFE -27.44
Consensus MFE -19.57
Energy contribution -19.65
Covariance contribution 0.08
Combinations/Pair 1.10
Mean z-score -2.63
Structure conservation index 0.71
SVM decision value 2.17
SVM RNA-class probability 0.989643
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19541201 99 - 27905053
UGAAAAUGA-----A--UGAAAAAUGGGGGGGGGGGGACGGGAGCGGGUUGUACAUGCAU------AUCUACUCCCGAAUGACAGGGCAACAAAUUGUCAACAAUUAUGCAA
((...((((-----.--((...................((((((..((((((....))).------)))..))))))..(((((.(....)....))))).)).)))).)). ( -24.00)
>DroSec_CAF1 9803 87 - 1
-------------------AAAAGUG------GGGCAACGGGAGCGGGUUGUACAUGCAUACAUAUACCUACUCCCGAAUGACAGGGCAACAAAUUGUCAACAAUUAUGCAA
-------------------.......------..(((.((((((..(((((((......))))...)))..))))))..(((((.(....)....))))).......))).. ( -27.30)
>DroSim_CAF1 9560 87 - 1
-------------------AAAAGUG------GGGCAACGGGAGCGGGUUGUACAUGCAUGCAUAUACCUACUCCCGAAUGACAGGGCAACAAAUUGUCAACAAUUAUGCAA
-------------------.......------..(((.((((((..(((((((......))))...)))..))))))..(((((.(....)....))))).......))).. ( -27.30)
>DroEre_CAF1 9645 87 - 1
-------------CACGCGAAAAGUG------GGGCAACGGGAGCGGGUUGUACAUGCAU------ACCUACUCCCCAAUGACAGGGCAACAAAUUGUCAACAAUUAUGCAA
-------------..(((.....)))------..(((..(((((..((((((....))).------)))..)))))...(((((.(....)....))))).......))).. ( -27.20)
>DroYak_CAF1 14220 96 - 1
----GGUGGGCCCCAUCAGAAAAGUG------GGGCAACGGGAGCGGGUUGUACAUGCAU------ACGUACUCCCAAAUGACAGGGCAACAAAUUGUCAACAAUUAUGCAA
----.((..(((((((.......)))------)))).))(((((.(.(((((....))).------)).).)))))...(((((.(....)....)))))............ ( -31.40)
>consensus
______________A___GAAAAGUG______GGGCAACGGGAGCGGGUUGUACAUGCAU______ACCUACUCCCGAAUGACAGGGCAACAAAUUGUCAACAAUUAUGCAA
..................................(((..(((((..((((((....))).......)))..)))))...(((((.(....)....))))).......))).. (-19.57 = -19.65 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:11 2006