Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,538,927 – 19,539,035 |
Length | 108 |
Max. P | 0.631755 |
Location | 19,538,927 – 19,539,035 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 82.10 |
Mean single sequence MFE | -21.29 |
Consensus MFE | -16.07 |
Energy contribution | -16.35 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.22 |
Mean z-score | -1.49 |
Structure conservation index | 0.75 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19538927 108 + 27905053 ACCAUAUUUCUCCAUAUGUUUGUUGUAAAAACUAAGUUUAUCUUCUAGAUAAGCGCCAGCAUAGGAGCUCUGCAAGGAAAAACAUAAAUAAAUA------CAAAUGGAAAAAUC .....((((.(((((.(((...((((.........(((((((.....)))))))((.(((......)))..))..............))))..)------)).))))).)))). ( -20.60) >DroSec_CAF1 7559 112 + 1 ACCAUAUUUCUCCAUGUGCUUGUUGUAAAAACUAAGUUUAUCCUCUAGAUAAGCGCCAGCAUAGGAGCUCUGCAAAGGAAAACAUAAAUAAAUAAA--UGAAAAUGGAAAAAUC .((((....((((.((((((.(((.....)))...(((((((.....)))))))...)))))))))).(((.....))).................--.....))))....... ( -22.20) >DroSim_CAF1 7296 112 + 1 ACCAUAUUUCUCCAUGUGCUUGUUGUAAAAACUAAGUUUAUCCUCUAGAUAAGCGCCAGCAUAGGAGCUCUGCAAAGGAAAACAUAAAUAAAUAAA--UGAAAAUGGAAAAAUC .((((....((((.((((((.(((.....)))...(((((((.....)))))))...)))))))))).(((.....))).................--.....))))....... ( -22.20) >DroEre_CAF1 7504 108 + 1 GCCAUAUUUCUCCAUGUGCUUGUUGUAAAAACUAAGUUUAUCUUCUAGAUAAGCGCCAGCAUAAGAGCUCUGCAAGGAAAAAGAUACAGAAA------UUGAAAUGGAAAAAUC .....((((.(((((.......(((((........(((((((.....)))))))((.(((......)))..))...........)))))...------.....))))).)))). ( -20.26) >DroYak_CAF1 11918 114 + 1 ACCAUAUUUCUCCAUGUGUUUGUUGUAGAAACUGAGUUUAUCUUCUAGAUAAGCGCCAGCAUAAGAGCUCUGCAAAAAGAGACAAGCAUAAAUAAAAUUAAAAAUGGAAACAUC ..............(((((((((........(((.(((((((.....)))))))..)))........((((......))))))))))))).............(((....))). ( -25.00) >DroMoj_CAF1 8109 99 + 1 UCCAUAUUUCUCCAUGUGCUUGUUGUAAAAGAUGAGCUUAUCCUCCAGAUACGCACCCGCAUAGGAGCUCUGCAAUGGCCAAU---------------UGAAAAUGCAUCCAUG ..............((((((..((......))..)((.((((.....)))).))....)))))(((((....((((.....))---------------)).....)).)))... ( -17.50) >consensus ACCAUAUUUCUCCAUGUGCUUGUUGUAAAAACUAAGUUUAUCCUCUAGAUAAGCGCCAGCAUAGGAGCUCUGCAAAGAAAAACAUAAAUAAAUA____UGAAAAUGGAAAAAUC .((((....((((.((((((.(((.....)))...(((((((.....)))))))...)))))))))).(((....))).........................))))....... (-16.07 = -16.35 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:10 2006