| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,538,108 – 19,538,216 |
| Length | 108 |
| Max. P | 0.793798 |
| Location | 19,538,108 – 19,538,216 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.77 |
| Mean single sequence MFE | -26.53 |
| Consensus MFE | -17.91 |
| Energy contribution | -17.47 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.793798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19538108 108 - 27905053 AAUUCAAGCUUUUUGAUGAUAGAUUCACCUUGAAAGGCAGUUUGGAGGGCAAAAACUUCGUUACAAAAUUGAAUAUGGUUUGUCCCUCCUUGCGCAUAUUGAUCAUAU ...((((((((((..((((.....)))..)..)))))).((..((((((...(((((..(((.((....)))))..)))))..))))))..)).....))))...... ( -29.10) >DroPse_CAF1 5674 104 - 1 ----GGACCAUUUCGAUGCACAACCCACCUUAAAGGGCAGCUUGGAGGGAAGGAAUUUGGUCACGAAAUUGAAGAUAGUUUGUCCCUCGCGACGCAUAUUGAUCAUAU ----........((((((.....(((........)))..(((((((((((..(((((...(((......)))....))))).)))))).))).)).))))))...... ( -24.80) >DroSim_CAF1 6490 97 - 1 AACAUAAACAUUU-----------UCACCUUGAAGGGCAGUUUGGAGGGCAAAAACUUCGUUACAAAAUUGAAAAUGGUUUGUCCCUCCUUACGCAUAUUGAUCAUAU .............-----------(((((.....))((.((..((((((((((...((((.........)))).....)))).))))))..))))....)))...... ( -20.90) >DroEre_CAF1 6700 101 - 1 -----AAACAUUU--GUGAAUGACCCACCUUGAAAGGCAGCUUGGAGGGUAAAAACUUGGUCACAAAAUUGAAAAUGGUUUGUCCCUCCUUGCGCAUGUUGAUCAUAU -----.......(--((((.((((...(((....)))..((..((((((...(((((...(((......)))....)))))..))))))..))....)))).))))). ( -27.90) >DroYak_CAF1 11095 101 - 1 GAUUCAAACACUU-------UCACUCACCUUGAAGGGCAGCUUGGAGGGUAAGAACUUGGUCACAAAAUUGAAAAUGGUUUGGCCCUCCUUGCGCAUAUUGAUCAUGU (((.(((...(((-------(((.......))))))((.((..(((((((..(((((...(((......)))....))))).)))))))..))))...)))))).... ( -31.70) >DroPer_CAF1 5662 104 - 1 ----GGACCAUUUCGAUGCACAACCCACCUUAAAGGGCAGCUUGGAGGGAAGGAAUUUGGUCACGAAAUUGAAGAUAGUUUGUCCCUCGCGACGCAUAUUGAUCAUAU ----........((((((.....(((........)))..(((((((((((..(((((...(((......)))....))))).)))))).))).)).))))))...... ( -24.80) >consensus ____CAAACAUUU__AUG_ACAACCCACCUUGAAGGGCAGCUUGGAGGGAAAAAACUUGGUCACAAAAUUGAAAAUGGUUUGUCCCUCCUUACGCAUAUUGAUCAUAU ....................................((.((..((((((...(((((...(((......)))....)))))..))))))..))))............. (-17.91 = -17.47 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:09 2006