Locus 7365

Sequence ID	3R_DroMel_CAF1
Location	19,525,498 – 19,525,590
Length	92
Max. P	0.896651

overview

Window 8

Location	19,525,498 – 19,525,590
Length	92
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	80.72
Mean single sequence MFE	-25.12
Consensus MFE	-17.29
Energy contribution	-18.35
Covariance contribution	1.06
Combinations/Pair	1.11
Mean z-score	-2.05
Structure conservation index	0.69
SVM decision value	0.99
SVM RNA-class probability	0.896651
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19525498 92 + 27905053
AGAACACAAUACACCUGUUGUGCAAAUUUGCCAUUAGUAGCCACUAAUCUACGCCCAGCCCACUUGGGCUUAGU---------------------UAAAUAUUUCCAUUUAUU--
....(((((((....)))))))..........((((((....))))))(((.((((((.....)))))).))).---------------------..................-- ( -17.70)
>DroSec_CAF1 20294 115 + 1
AGAACACAAUACACCUGUUGUGCAAAUUUGCCAUUAGCAGCCGCUAAUCAACGCCCAGCCCACUUGGGCUUAGUACACCGAUUAGGCUAAUCGGGUAAAUAUUUCCAUUUAUUUG
....(((((((....)))))))...(((((((((((((.....((((((...((..(((((....)))))..)).....))))))))))))..)))))))............... ( -29.60)
>DroSim_CAF1 20459 115 + 1
AGAACACAAUACACCUGUUGUGCAAAUUUGCCAUUAGCAGCCGCUAAUCAACGCCCAGCCCACUUGGGCUUAGUACACCGAUUAGGCUAAUCGGGUAAAUAUUUCCAUUUAUUUG
....(((((((....)))))))...(((((((((((((.....((((((...((..(((((....)))))..)).....))))))))))))..)))))))............... ( -29.60)
>DroYak_CAF1 20478 110 + 1
AGAACAGAACACACCUGUUCUGCAAAUUUCCCAUUAUCAGGCGCUAAUCUACGCC-----CCCUUGGCCCUAGUACAAUGACUAGUUUAAUCGGGUAAAUAUUUCCAUUUAUUCG
.((((((((((....)))))))...(((((((.......((((........))))-----.........(((((......))))).......))).))))...........))). ( -23.60)
>consensus
AGAACACAAUACACCUGUUGUGCAAAUUUGCCAUUAGCAGCCGCUAAUCAACGCCCAGCCCACUUGGGCUUAGUACACCGAUUAGGCUAAUCGGGUAAAUAUUUCCAUUUAUUUG
....(((((((....)))))))...(((((((((((((....))))))....((..(((((....)))))..))...................)))))))............... (-17.29 = -18.35 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:08 2006